From bca08fbcd992d2cd9f0bbf4aee9b1e7a8f883331 Mon Sep 17 00:00:00 2001 From: skillfactor-pipeline Date: Fri, 14 Aug 2026 16:58:12 +0200 Subject: [PATCH] feat: bioengineer skill package v0.1.0 --- PROVENANCE.md | 31 +++++ SKILL.md | 61 +++++++++ manifest.json | 196 +++++++++++++++++++++++++++++ references/ai-skills.md | 266 ++++++++++++++++++++++++++++++++++++++++ references/market.md | 67 ++++++++++ references/profile.md | 28 +++++ references/skills.md | 213 ++++++++++++++++++++++++++++++++ references/tasks.md | 62 ++++++++++ references/tools.md | 140 +++++++++++++++++++++ 9 files changed, 1064 insertions(+) create mode 100644 PROVENANCE.md create mode 100644 SKILL.md create mode 100644 manifest.json create mode 100644 references/ai-skills.md create mode 100644 references/market.md create mode 100644 references/profile.md create mode 100644 references/skills.md create mode 100644 references/tasks.md create mode 100644 references/tools.md diff --git a/PROVENANCE.md b/PROVENANCE.md new file mode 100644 index 0000000..f7b4fa4 --- /dev/null +++ b/PROVENANCE.md @@ -0,0 +1,31 @@ +# Data provenance — bioengineer + +Where the content of this skill package comes from, counted by +content items (tasks, competences, tools, evidence entries, curated +knowledge). Rendered live by Gitea: + +```mermaid +%%{init: {'theme':'base','themeVariables':{'pie1':'#f9a825','pie2':'#1e88e5','pie3':'#ff355e','pie4':'#d97757','pie5':'#8e24aa','pieOuterStrokeWidth':'0px','pieSectionTextColor':'#fff'}}}%% +pie showData + title Content sources — bioengineer + "ESCO (occupation & competences)" : 89 + "O*NET (tasks & tools)" : 188 + "Job boards (market evidence)" : 118 + "Anthropic official Claude skills" : 5 + "External AI skill packs (mapped)" : 138 +``` + +| Source | Items | Share | Files | +|---|---|---|---| +| ESCO (occupation & competences) | 89 | 16.5 % | references/profile.md, references/skills.md | +| O*NET (tasks & tools) | 188 | 34.9 % | references/tasks.md, references/tools.md | +| Job boards (market evidence) | 118 | 21.9 % | references/market.md (full report) + "Market evidence" headline sections | +| Wikipedia & AI expert curation | 0 | 0.0 % | glossary, literature, usecases, intake, quality, evals/ | +| Anthropic official Claude skills | 5 | 0.9 % | references/ai-skills.md, section "anthropics/skills" (official Claude Code skills) | +| External AI skill packs (mapped) | 138 | 25.7 % | references/ai-skills.md (per-source attribution inside) | +| Stack Exchange practitioner Q&A (CC-BY-SA) | 0 | 0.0 % | references/practitioner-qa.md (per-entry attribution inside) | + +Licensing: O*NET (USDOL/ETA, CC BY 4.0) · ESCO (© European Union) · +job-ad evidence via official APIs (JSearch/Adzuna) · Wikipedia content +paraphrased with source URLs — never copied · external AI skills are +linked, not copied (Apache-2.0/MIT/source-available, see ai-skills.md). diff --git a/SKILL.md b/SKILL.md new file mode 100644 index 0000000..5593412 --- /dev/null +++ b/SKILL.md @@ -0,0 +1,61 @@ +--- +name: bioengineer +description: "Occupational skill for the role 'bioengineer' (also: bioengineering consultant, bioengineering technology adviser, bioengineering adviser, bio-engineer, bioengineering technology expert, bioengineering expert). Use when the user asks for typical bioengineer work such as: Conduct training or in-services to educate clinicians and other personnel on proper use of equipment.; Write documents describing protocols, policies, standards for use, maintenance, and repair of medical equipment.; Collaborate with manufacturing or quality assurance staff to prepare product specification or safety sheets, standard operating procedures, user manuals, or qualification and validation reports." +--- + +# Bioengineer + +Bioengineers combine state of the art findings in the field of biology with engineering logics in order to develop solutions aimed at improving the well-being of society. They can develop improvement systems for natural resource conservation, agriculture, food production, genetic modification, and economic use. + +## Core workflow + +1. Conduct training or in-services to educate clinicians and other personnel on proper use of equipment. +2. Write documents describing protocols, policies, standards for use, maintenance, and repair of medical equipment. +3. Collaborate with manufacturing or quality assurance staff to prepare product specification or safety sheets, standard operating procedures, user manuals, or qualification and validation reports. +4. Communicate with bioregulatory authorities regarding licensing or compliance responsibilities. +5. Communicate with suppliers regarding the design or specifications of bioproduction equipment, instrumentation, or materials. +6. Confer with research and biomanufacturing personnel to ensure the compatibility of design and production. +7. Consult with chemists or biologists to develop or evaluate novel technologies. +8. Design or conduct follow-up experimentation, based on generated data, to meet established process objectives. + +## How to use this skill + +- Read [references/profile.md](references/profile.md) for the occupation profile and scope. +- Consult [references/tasks.md](references/tasks.md) for the full task and activity inventory. +- Check [references/skills.md](references/skills.md) for essential vs. optional competences. +- Check [references/tools.md](references/tools.md) for the software commonly used in this role. +- See [references/ai-skills.md](references/ai-skills.md) — matched external AI agent skills (per-source attribution). + +## Key competences (essential) + +- adjust engineering designs +- approve engineering design +- bioeconomy +- biological chemistry +- biology +- biotechnology +- computational biology +- computational chemistry +- develop bioremediation techniques +- engineering principles +- engineering processes +- genetics +- life sciences +- nanomaterials +- perform scientific research + +## Hot technologies + +- SAS +- The MathWorks MATLAB +- Splunk Enterprise +- Autodesk AutoCAD +- Dassault Systemes SolidWorks +- Microsoft Access +- Oracle Database +- Structured query language SQL +- C +- Microsoft Azure software + +--- +*Sources: ESCO v1.2.1 (http://data.europa.eu/esco/occupation/f9433fdb-dde1-46cf-9e91-b49d243946a7), O*NET 30.3 (17-2031.00). See manifest.json for licensing/attribution.* diff --git a/manifest.json b/manifest.json new file mode 100644 index 0000000..cd9b1a0 --- /dev/null +++ b/manifest.json @@ -0,0 +1,196 @@ +{ + "name": "bioengineer", + "title": "bioengineer", + "version": "0.1.0", + "layer": "core", + "language": "en", + "generated": "2026-07-07", + "ids": { + "esco_uri": "http://data.europa.eu/esco/occupation/f9433fdb-dde1-46cf-9e91-b49d243946a7", + "esco_code": "2149.5", + "isco_group": "2149", + "onet_soc": "17-2031.00", + "crosswalk_match": "exactMatch" + }, + "sources": [ + { + "name": "ESCO", + "version": "1.2.1", + "url": "https://esco.ec.europa.eu/" + }, + { + "name": "O*NET", + "version": "30.3", + "url": "https://www.onetcenter.org/", + "license": "CC BY 4.0" + } + ], + "attribution": "This package includes information from the O*NET Database (v30.3) by the U.S. Department of Labor, Employment and Training Administration (USDOL/ETA), CC BY 4.0. skillfactor is not endorsed by USDOL/ETA. ESCO data (v1.2.1) (c) European Union, used per the ESCO download conditions: https://esco.ec.europa.eu/en/use-esco/download", + "counts": { + "tasks": 30, + "dwas": 23, + "skills_essential": 16, + "skills_optional": 72, + "software": 134 + }, + "enrichment_ai_skills": { + "generated": "2026-07-14", + "method": "deterministic mapping (ISCO prefix + title/competence keywords)", + "sources": { + "anthropics/skills": { + "repo": "https://github.com/anthropics/skills", + "commit": "f6656c1", + "license": "Apache-2.0; the document skills (docx/pdf/pptx/xlsx) are source-available \u2014 see the LICENSE.txt in the upstream skill folder", + "skills": 2 + }, + "K-Dense-AI/claude-scientific-skills": { + "repo": "https://github.com/K-Dense-AI/claude-scientific-skills", + "commit": "4d97e29", + "license": "MIT", + "skills": 12 + }, + "K-Dense-AI/scientific-agent-skills": { + "repo": "https://github.com/K-Dense-AI/scientific-agent-skills", + "commit": "4d97e29", + "license": "MIT", + "skills": 12 + }, + "davila7/claude-code-templates": { + "repo": "https://github.com/davila7/claude-code-templates", + "commit": "fa79251", + "license": "MIT", + "skills": 12 + }, + "brycewang-stanford/Auto-Empirical-Research-Skills": { + "repo": "https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills", + "commit": "85bf545", + "license": "CC-BY-4.0", + "skills": 12 + }, + "foryourhealth111-pixel/Vibe-Skills": { + "repo": "https://github.com/foryourhealth111-pixel/Vibe-Skills", + "commit": "34429a8", + "license": "Apache-2.0", + "skills": 10 + }, + "hypnguyen1209/offensive-claude": { + "repo": "https://github.com/hypnguyen1209/offensive-claude", + "commit": "4d62be7", + "license": "MIT", + "skills": 1 + }, + "sanjay3290/ai-skills": { + "repo": "https://github.com/sanjay3290/ai-skills", + "commit": "3619692", + "license": "Apache-2.0", + "skills": 1 + }, + "ferdinandobons/startup-skill": { + "repo": "https://github.com/ferdinandobons/startup-skill", + "commit": "a5f97c3", + "license": "MIT", + "skills": 1 + }, + "code-yeongyu/oh-my-openagent": { + "repo": "https://github.com/code-yeongyu/oh-my-openagent", + "commit": "b19f652", + "license": "custom (see upstream LICENSE)", + "skills": 1 + }, + "zebbern/claude-code-guide": { + "repo": "https://github.com/zebbern/claude-code-guide", + "commit": "d2c5280", + "license": "MIT", + "skills": 1 + }, + "staruhub/ClaudeSkills": { + "repo": "https://github.com/staruhub/ClaudeSkills", + "commit": "3d4045d", + "license": "MIT", + "skills": 1 + }, + "a5c-ai/babysitter": { + "repo": "https://github.com/a5c-ai/babysitter", + "commit": "44a5d58b", + "license": "MIT", + "skills": 4 + }, + "claude-world/director-mode-lite": { + "repo": "https://github.com/claude-world/director-mode-lite", + "commit": "9d0c333", + "license": "MIT", + "skills": 1 + }, + "fcakyon/claude-codex-settings": { + "repo": "https://github.com/fcakyon/claude-codex-settings", + "commit": "44b7c00", + "license": "Apache-2.0", + "skills": 1 + }, + "wanshuiyin/Auto-claude-code-research-in-sleep": { + "repo": "https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep", + "commit": "eb5c9d7", + "license": "MIT", + "skills": 2 + }, + "AgriciDaniel/claude-blog": { + "repo": "https://github.com/AgriciDaniel/claude-blog", + "commit": "49842ea", + "license": "MIT", + "skills": 1 + }, + "infrasity-labs/dev-gtm-claude-skills": { + "repo": "https://github.com/infrasity-labs/dev-gtm-claude-skills", + "commit": "02cfefb", + "license": "MIT", + "skills": 1 + }, + "mohitagw15856/pm-claude-skills": { + "repo": "https://github.com/mohitagw15856/pm-claude-skills", + "commit": "876fa30", + "license": "MIT", + "skills": 1 + }, + "nWave-ai/nWave": { + "repo": "https://github.com/nWave-ai/nWave", + "commit": "1d0f13c", + "license": "MIT", + "skills": 1 + }, + "Ar9av/PaperOrchestra": { + "repo": "https://github.com/Ar9av/PaperOrchestra", + "commit": "07b981f", + "license": "MIT", + "skills": 2 + } + }, + "total_skills": 80, + "tiers": { + "core": 78, + "adjacent": 2 + } + }, + "provenance": { + "items": { + "esco": 89, + "onet": 188, + "jobads": 118, + "wiki_ai": 0, + "anthropic": 5, + "ai_skills": 138, + "stackx": 0 + }, + "share_percent": { + "esco": 16.5, + "onet": 34.9, + "jobads": 21.9, + "wiki_ai": 0.0, + "anthropic": 0.9, + "ai_skills": 25.7, + "stackx": 0.0 + }, + "method": "content items per source category" + }, + "collar": "white", + "computer_work": true +} \ No newline at end of file diff --git a/references/ai-skills.md b/references/ai-skills.md new file mode 100644 index 0000000..2abd1c3 --- /dev/null +++ b/references/ai-skills.md @@ -0,0 +1,266 @@ +# External AI agent skills — bioengineer + +Proven, publicly available AI agent skills mapped to this occupation. +Nothing is copied from the sources: every entry is a name, a one-line +summary and a link to the upstream skill package. Each section names +its source repository, commit, license and retrieval date. + +**Tiers:** `core` = the skill directly exercises a top market hard +skill, tool or method (from gated job-ad evidence) or an essential +ESCO competence of this occupation; `adjacent` = +plausibly useful, secondary. Entries are capped at 12 per source +and 80 in total per occupation (core first, +strongest matches survive); everything beyond the caps is excluded +and logged in the pipeline audit trail, not in this package. + +_Matched deterministically (ISCO group + title/competence keywords, +tiered against market evidence + ESCO essentials) by +`pipeline/p5_enrich_ai_skills.py` on 2026-07-14._ + +## Source: anthropics/skills + +- Repository: [https://github.com/anthropics/skills](https://github.com/anthropics/skills) (commit `f6656c1`, retrieved 2026-07-14) +- License: Apache-2.0; the document skills (docx/pdf/pptx/xlsx) are source-available — see the LICENSE.txt in the upstream skill folder + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `docx` | adjacent | Use this skill whenever the user wants to create, read, edit, or manipulate Word documents (.docx files) or Word templates (.dotx files). Triggers include: any mention of 'Word doc', 'word document', '.docx', '.dotx', or requests to … | [source](https://github.com/anthropics/skills/tree/main/skills/docx) | +| `pdf` | adjacent | Use this skill whenever the user wants to do anything with PDF files. This includes reading or extracting text/tables from PDFs, combining or merging multiple PDFs into one, splitting PDFs apart, rotating pages, adding watermarks, creating … | [source](https://github.com/anthropics/skills/tree/main/skills/pdf) | + +## Source: a5c-ai/babysitter + +- Repository: [https://github.com/a5c-ai/babysitter](https://github.com/a5c-ai/babysitter) (commit `44a5d58b`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `elicit-research-assistant` | core | AI-assisted literature review for question-answering over papers and evidence synthesis | [source](https://github.com/a5c-ai/babysitter/tree/44a5d58b/library/specializations/domains/science/scientific-discovery/skills/elicit-research-assistant) | +| `meta-analysis-engine` | core | Skill for conducting meta-analyses of research findings | [source](https://github.com/a5c-ai/babysitter/tree/44a5d58b/library/specializations/domains/science/scientific-discovery/skills/meta-analysis-engine) | +| `iso14971-risk-analyzer` | core | Comprehensive risk management skill implementing ISO 14971:2019 methodology for medical device risk analysis | [source](https://github.com/a5c-ai/babysitter/tree/44a5d58b/library/specializations/domains/science/biomedical-engineering/skills/iso14971-risk-analyzer) | +| `quantitative-methods` | core | Design and execute statistical analyses including regression modeling, hypothesis testing, power analysis, and robustness checks using R, Stata, SPSS, or Python | [source](https://github.com/a5c-ai/babysitter/tree/44a5d58b/library/specializations/domains/social-sciences-humanities/social-sciences/skills/quantitative-methods) | + +## Source: AgriciDaniel/claude-blog + +- Repository: [https://github.com/AgriciDaniel/claude-blog](https://github.com/AgriciDaniel/claude-blog) (commit `49842ea`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `blog-strategy` | core | Blog strategy development including topic cluster architecture with hub-and-spoke design, audience mapping, competitive landscape analysis, AI citation surface strategy across ChatGPT/Perplexity/AI Overviews, distribution channel planning … | [source](https://github.com/AgriciDaniel/claude-blog/tree/49842ea/skills/blog-strategy) | + +## Source: Ar9av/PaperOrchestra + +- Repository: [https://github.com/Ar9av/PaperOrchestra](https://github.com/Ar9av/PaperOrchestra) (commit `07b981f`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `paper-orchestra` | core | Orchestrate the full PaperOrchestra (Song et al., 2026, arXiv:2604.05018) five-agent pipeline to turn unstructured research materials (idea, experimental log, LaTeX template, conference guidelines, optional figures) into a submission-ready … | [source](https://github.com/Ar9av/PaperOrchestra/tree/07b981f/skills/paper-orchestra) | +| `paper-writing-bench` | core | Reverse-engineer raw materials (Sparse idea, Dense idea, experimental log) from an existing AI research paper to build a benchmark case for evaluating paper-writing pipelines. Replicates the PaperWritingBench dataset construction procedure … | [source](https://github.com/Ar9av/PaperOrchestra/tree/07b981f/skills/paper-writing-bench) | + +## Source: brycewang-stanford/Auto-Empirical-Research-Skills + +- Repository: [https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills) (commit `85bf545`, retrieved 2026-07-14) +- License: CC-BY-4.0 + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `claude-scientific-guide` | core | Ready-to-use agent skills for scientific research and engineering | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/research/methodology/claude-scientific-guide) | +| `academic-baseline` | core | Use when working on any empirical academic research context — paper writing, data analysis, literature review, or any task involving citations, results, or publication artifacts. Establishes non-negotiable principles that govern all other … | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/60-regisely-superpapers/skills/academic-baseline) | +| `econ-audit` | core | Audit economic analysis outputs (fiscal briefings, macro briefings, market research, longlists, and other quantitative economic documents) against methodology standards, academic literature, and common errors. Runs structured checks across … | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/58-charlescoverdale-econstack/econ-audit) | +| `psychology-research-guide` | core | Psychological research methods, experimental design, and analysis | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/domains/social-science/psychology-research-guide) | +| `methodology-skills` | core | 13 research methodology skills. Trigger: study design, methodology selection, scientific reasoning, mentoring. Design: rigorous methods frameworks covering qualitative, quantitative, and mixed approaches. | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/research/methodology) | +| `research-ideation` | core | This skill should be used when the user asks to "brainstorm research ideas", "use 5W1H framework", "identify research gaps", "conduct gap analysis", "start research project", "conduct literature review", "define research question", "select … | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/33-Galaxy-Dawn-claude-scholar/skills/research-ideation) | +| `law-skills` | core | 9 legal research skills. Trigger: legal research, case law analysis, regulatory compliance. Design: legal databases, citation networks, and judicial analytics tools. | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/domains/law) | +| `new-project` | core | Full research pipeline from idea to paper. Orchestrates all phases — discovery, strategy, analysis, writing, peer review, and submission. Use when starting a new research project from scratch. | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/16-hsantanna88-clo-author/dot-claude/skills/new-project) | +| `ai-ml-skills` | core | 27 ai & machine learning skills. Trigger: ML experiments, model training, deep learning, NLP, computer vision. Design: covers frameworks, benchmarks, paper reproduction, and AI research workflows. | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/domains/ai-ml) | +| `i0` | core | Systematic Review Pipeline Orchestrator - Coordinates systematic literature review automation Manages the complete 7-stage PRISMA 2020 pipeline from research question to RAG system Delegates to specialized agents (I1, I2, I3) while … | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/25-HosungYou-Diverga/skills/i0) | +| `research-review` | core | Get a deep critical review of research from GPT via Codex MCP. Use when user says "review my research", "help me review", "get external review", or wants critical feedback on research ideas, papers, or experimental results. | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/42-wanshuiyin-ARIS/skills/research-review) | +| `results-analysis` | core | This skill should be used when the user asks to "analyze experimental results", "run strict statistical analysis", "compare model performance", "generate scientific figures", "check significance", "do ablation analysis", or mentions … | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/33-Galaxy-Dawn-claude-scholar/skills/results-analysis) | + +## Source: claude-world/director-mode-lite + +- Repository: [https://github.com/claude-world/director-mode-lite](https://github.com/claude-world/director-mode-lite) (commit `9d0c333`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `handoff-gemini` | core | Delegate long-context analysis, research, and large-document summarization to Google Gemini CLI (1M-token context) via non-interactive `gemini -p`, preserving Claude context. Use when the user says 'use gemini'/'hand off to gemini' or a … | [source](https://github.com/claude-world/director-mode-lite/tree/9d0c333/skills/handoff-gemini) | + +## Source: code-yeongyu/oh-my-openagent + +- Repository: [https://github.com/code-yeongyu/oh-my-openagent](https://github.com/code-yeongyu/oh-my-openagent) (commit `b19f652`, retrieved 2026-07-14) +- License: custom (see upstream LICENSE) + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `debugging` | core | MUST USE for any real runtime debugging across ANY language or binary — crashes, silent failures, wrong responses, stuck processes, memory leaks, async misbehavior, unexplained timing, reverse engineering. Runs a hypothesis-driven loop: … | [source](https://github.com/code-yeongyu/oh-my-openagent/tree/b19f652/packages/shared-skills/skills/debugging) | + +## Source: davila7/claude-code-templates + +- Repository: [https://github.com/davila7/claude-code-templates](https://github.com/davila7/claude-code-templates) (commit `fa79251`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `cobrapy` | core | Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis. | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/cobrapy) | +| `biomni` | core | Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/biomni) | +| `scientific-critical-thinking` | core | Evaluate research rigor. Assess methodology, experimental design, statistical validity, biases, confounding, evidence quality (GRADE, Cochrane ROB), for critical analysis of scientific claims. | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/scientific-critical-thinking) | +| `anndata` | core | This skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics analysis, managing experimental measurements with metadata, or handling large-scale biological datasets. Use when tasks … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/anndata) | +| `denario` | core | Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/denario) | +| `geniml` | core | This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), building consensus peaks … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/geniml) | +| `scvi-tools` | core | This skill should be used when working with single-cell omics data analysis using scvi-tools, including scRNA-seq, scATAC-seq, CITE-seq, spatial transcriptomics, and other single-cell modalities. Use this skill for probabilistic modeling, … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/scvi-tools) | +| `cellxgene-census` | core | Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale single-cell analysis. | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/cellxgene-census) | +| `pymoo` | core | Multi-objective optimization framework. NSGA-II, NSGA-III, MOEA/D, Pareto fronts, constraint handling, benchmarks (ZDT, DTLZ), for engineering design and optimization problems. | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/pymoo) | +| `reactome-database` | core | Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies. | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/reactome-database) | +| `scientific-brainstorming` | core | Research ideation partner. Generate hypotheses, explore interdisciplinary connections, challenge assumptions, develop methodologies, identify research gaps, for creative scientific problem-solving. | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/scientific-brainstorming) | +| `string-database` | core | Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG enrichment, interaction discovery, 5000+ species, for systems biology. | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/string-database) | + +## Source: fcakyon/claude-codex-settings + +- Repository: [https://github.com/fcakyon/claude-codex-settings](https://github.com/fcakyon/claude-codex-settings) (commit `44b7c00`, retrieved 2026-07-14) +- License: Apache-2.0 + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `paper-search-usage` | core | This skill should be used when user asks to "search for papers", "find research papers", "search arXiv", "search PubMed", "find academic papers", "search IEEE", "search Scopus", or "look up scientific literature". | [source](https://github.com/fcakyon/claude-codex-settings/tree/44b7c00/plugins/paper-search-tools/skills/paper-search-usage) | + +## Source: ferdinandobons/startup-skill + +- Repository: [https://github.com/ferdinandobons/startup-skill](https://github.com/ferdinandobons/startup-skill) (commit `a5f97c3`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `startup-design` | core | Design, validate, and plan a startup from scratch. Covers market research, competitive analysis, business model, brand identity, product definition, financial projections, and validation experiments. Trigger when the user has a startup … | [source](https://github.com/ferdinandobons/startup-skill/tree/a5f97c3/startup-design) | + +## Source: foryourhealth111-pixel/Vibe-Skills + +- Repository: [https://github.com/foryourhealth111-pixel/Vibe-Skills](https://github.com/foryourhealth111-pixel/Vibe-Skills) (commit `34429a8`, retrieved 2026-07-14) +- License: Apache-2.0 + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `denario` | core | Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/denario) | +| `scientific-critical-thinking` | core | Evaluate scientific claims and evidence quality. Use for assessing experimental design validity, identifying biases and confounders, applying evidence grading frameworks (GRADE, Cochrane Risk of Bias), or teaching critical analysis. Best … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/scientific-critical-thinking) | +| `scholar-evaluation` | core | Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across research quality dimensions including problem formulation, methodology, analysis, and writing with quantitative scoring and … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/scholar-evaluation) | +| `designing-experiments` | core | Design experiments and quasi-experiments before analysis. Use when choosing study design, treatment/control structure, outcomes, assumptions, validation plans after scientific experiment failure, or which of DiD, ITS, synthetic control, or … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/designing-experiments) | +| `geomaster` | core | Comprehensive geospatial science skill covering remote sensing, GIS, spatial analysis, machine learning for earth observation, and 30+ scientific domains. Supports satellite imagery processing (Sentinel, Landsat, MODIS, SAR, … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/geomaster) | +| `scientific-brainstorming` | core | Open-ended scientific ideation partner. Use for research gaps, mechanism exploration, interdisciplinary connections, assumptions, possible research directions, and lightweight literature matrix or A+B paper-combination idea mapping. For … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/scientific-brainstorming) | +| `scientific-slides` | core | Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/scientific-slides) | +| `statistical-analysis` | core | Statistical analysis toolkit. Hypothesis tests (t-test, ANOVA, chi-square), regression, correlation, Bayesian stats, power analysis, assumption checks, APA reporting, for academic research. | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/statistical-analysis) | +| `exploratory-data-analysis` | core | Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/exploratory-data-analysis) | +| `literature-review` | core | Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/literature-review) | + +## Source: hypnguyen1209/offensive-claude + +- Repository: [https://github.com/hypnguyen1209/offensive-claude](https://github.com/hypnguyen1209/offensive-claude) (commit `4d62be7`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `malware-analysis` | core | Use when reverse-engineering or detecting malware — static triage + capa/YARA-X, emulation/DBI/.NET unpacking, dynamic/fileless/Volatility 3 memory analysis, C2 config extraction (Cobalt Strike/CAPE), C2 traffic detection (JA4+, beaconing) | [source](https://github.com/hypnguyen1209/offensive-claude/tree/4d62be7/skills/malware-analysis) | + +## Source: infrasity-labs/dev-gtm-claude-skills + +- Repository: [https://github.com/infrasity-labs/dev-gtm-claude-skills](https://github.com/infrasity-labs/dev-gtm-claude-skills) (commit `02cfefb`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `blog-strategy` | core | Blog strategy development including topic cluster architecture with hub-and-spoke design, audience mapping, competitive landscape analysis, AI citation surface strategy across ChatGPT/Perplexity/AI Overviews, distribution channel planning … | [source](https://github.com/infrasity-labs/dev-gtm-claude-skills/tree/02cfefb/.claude/skills/blog-strategy) | + +## Source: K-Dense-AI/claude-scientific-skills + +- Repository: [https://github.com/K-Dense-AI/claude-scientific-skills](https://github.com/K-Dense-AI/claude-scientific-skills) (commit `4d97e29`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `hugging-science` | core | Use when the user is doing AI/ML work in a scientific domain such as biology, chemistry, physics, astronomy, climate, genomics, materials, medicine, ecology, energy, engineering, math, drug discovery, protein design, weather modeling, … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/hugging-science) | +| `scientific-critical-thinking` | core | Evaluate scientific claims and evidence quality. Use for assessing experimental design validity, identifying biases and confounders, applying evidence grading frameworks (GRADE, Cochrane Risk of Bias), or teaching critical analysis. Best … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/scientific-critical-thinking) | +| `scholar-evaluation` | core | Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across research quality dimensions including problem formulation, methodology, analysis, and writing with quantitative scoring and … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/scholar-evaluation) | +| `geomaster` | core | Comprehensive geospatial science skill covering remote sensing, GIS, spatial analysis, machine learning for earth observation, and 30+ scientific domains. Supports satellite imagery processing (Sentinel, Landsat, MODIS, SAR, … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/geomaster) | +| `latex-posters` | core | Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/latex-posters) | +| `market-research-reports` | core | Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics and generate-image, … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/market-research-reports) | +| `research-lookup` | core | Look up current research and scientific information across three backends: fast web search via parallel-cli (default), the Parallel Chat API for deep multi-source synthesis, and Perplexity sonar-pro-search for scholarly paper searches. … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/research-lookup) | +| `scientific-slides` | core | Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/scientific-slides) | +| `statistical-analysis` | core | Guided statistical analysis for research data - test selection, assumption checking, effect sizes, power analysis, Bayesian alternatives, and APA-formatted reporting. Use whenever a user wants to compare groups, test a hypothesis, analyze … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/statistical-analysis) | +| `autoskill` | core | Observe the user's screen via screenpipe, detect repeated research workflows, match them against existing scientific-agent-skills, and draft new skills (or composition recipes that chain existing ones) for the patterns not yet covered. Use … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/autoskill) | +| `exa-search` | core | Web toolkit powered by Exa, tuned for scientific and technical content. Use this skill when the user needs to search the web or fetch/extract URL content. Covers: web search (semantic lookups, research, current info — with optional … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/exa-search) | +| `exploratory-data-analysis` | core | Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/exploratory-data-analysis) | + +## Source: K-Dense-AI/scientific-agent-skills + +- Repository: [https://github.com/K-Dense-AI/scientific-agent-skills](https://github.com/K-Dense-AI/scientific-agent-skills) (commit `4d97e29`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `hugging-science` | core | Use when the user is doing AI/ML work in a scientific domain such as biology, chemistry, physics, astronomy, climate, genomics, materials, medicine, ecology, energy, engineering, math, drug discovery, protein design, weather modeling, … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/hugging-science) | +| `scientific-critical-thinking` | core | Evaluate scientific claims and evidence quality. Use for assessing experimental design validity, identifying biases and confounders, applying evidence grading frameworks (GRADE, Cochrane Risk of Bias), or teaching critical analysis. Best … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/scientific-critical-thinking) | +| `scholar-evaluation` | core | Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across research quality dimensions including problem formulation, methodology, analysis, and writing with quantitative scoring and … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/scholar-evaluation) | +| `geomaster` | core | Comprehensive geospatial science skill covering remote sensing, GIS, spatial analysis, machine learning for earth observation, and 30+ scientific domains. Supports satellite imagery processing (Sentinel, Landsat, MODIS, SAR, … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/geomaster) | +| `latex-posters` | core | Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/latex-posters) | +| `market-research-reports` | core | Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics and generate-image, … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/market-research-reports) | +| `research-lookup` | core | Look up current research and scientific information across three backends: fast web search via parallel-cli (default), the Parallel Chat API for deep multi-source synthesis, and Perplexity sonar-pro-search for scholarly paper searches. … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/research-lookup) | +| `scientific-slides` | core | Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/scientific-slides) | +| `statistical-analysis` | core | Guided statistical analysis for research data - test selection, assumption checking, effect sizes, power analysis, Bayesian alternatives, and APA-formatted reporting. Use whenever a user wants to compare groups, test a hypothesis, analyze … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/statistical-analysis) | +| `autoskill` | core | Observe the user's screen via screenpipe, detect repeated research workflows, match them against existing scientific-agent-skills, and draft new skills (or composition recipes that chain existing ones) for the patterns not yet covered. Use … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/autoskill) | +| `exa-search` | core | Web toolkit powered by Exa, tuned for scientific and technical content. Use this skill when the user needs to search the web or fetch/extract URL content. Covers: web search (semantic lookups, research, current info — with optional … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/exa-search) | +| `exploratory-data-analysis` | core | Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/exploratory-data-analysis) | + +## Source: mohitagw15856/pm-claude-skills + +- Repository: [https://github.com/mohitagw15856/pm-claude-skills](https://github.com/mohitagw15856/pm-claude-skills) (commit `876fa30`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `literature-review` | core | Structure and write a literature review for any research topic. Use when asked to write a literature review, systematic review summary, narrative review, or research background section. Produces a structured review with thematic … | [source](https://github.com/mohitagw15856/pm-claude-skills/tree/876fa30/plugins/pm-research/skills/literature-review) | + +## Source: nWave-ai/nWave + +- Repository: [https://github.com/nWave-ai/nWave](https://github.com/nWave-ai/nWave) (commit `1d0f13c`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `nw-stress-analysis` | core | Advanced architecture stress analysis methodology for designing systems that survive unknown stresses. Load when --residuality flag is used or when designing high-uncertainty, mission-critical systems. | [source](https://github.com/nWave-ai/nWave/tree/1d0f13c/nWave/skills/nw-stress-analysis) | + +## Source: sanjay3290/ai-skills + +- Repository: [https://github.com/sanjay3290/ai-skills](https://github.com/sanjay3290/ai-skills) (commit `3619692`, retrieved 2026-07-14) +- License: Apache-2.0 + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `deep-research` | core | Execute autonomous multi-step research using Google Gemini Deep Research Agent. Use for: market analysis, competitive landscaping, literature reviews, technical research, due diligence. Takes 2-10 minutes but produces detailed, cited … | [source](https://github.com/sanjay3290/ai-skills/tree/3619692/skills/deep-research) | + +## Source: staruhub/ClaudeSkills + +- Repository: [https://github.com/staruhub/ClaudeSkills](https://github.com/staruhub/ClaudeSkills) (commit `3d4045d`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `deep-research` | core | Use this skill when the user wants an evidence-based research memo, literature review, market/policy/technical landscape, or a multi-source decision brief with citations, trade-offs, and a clear conclusion. Best for tasks that need … | [source](https://github.com/staruhub/ClaudeSkills/tree/3d4045d/skills/Geek-skills-deep-research) | + +## Source: wanshuiyin/Auto-claude-code-research-in-sleep + +- Repository: [https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep](https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep) (commit `eb5c9d7`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `research-review` | core | Get a deep critical review of research from GPT using a secondary Codex agent. Use when user says \"review my research\", \"help me review\", \"get external review\", or wants critical feedback on research ideas, papers, or experimental … | [source](https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep/tree/eb5c9d7/skills/skills-codex/research-review) | +| `research-lit` | core | Search and analyze research papers, find related work, summarize key ideas. Use when user says "find papers", "related work", "literature review", "what does this paper say", or needs to understand academic papers. | [source](https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep/tree/eb5c9d7/skills/research-lit) | + +## Source: zebbern/claude-code-guide + +- Repository: [https://github.com/zebbern/claude-code-guide](https://github.com/zebbern/claude-code-guide) (commit `d2c5280`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `vc-industry-research` | core | Generate professional primary market / venture capital industry research reports, including sector deep-dives, investment memos, and market analysis. Produces detailed PDF reports covering TMT, consumer, healthcare, and industrials. … | [source](https://github.com/zebbern/claude-code-guide/tree/d2c5280/skills/vc-industry-research) | diff --git a/references/market.md b/references/market.md new file mode 100644 index 0000000..0c5ab25 --- /dev/null +++ b/references/market.md @@ -0,0 +1,67 @@ +# Market evidence report — bioengineer + +Source: **8 real job ads** (JSearch API, countries: us 8), extracted into the MSSQL evidence store; as of 2026-07-09. +This report contains extracted, aggregated facts only — no ad text is +reproduced (copyright / platform terms). + +## Seniority distribution + +| Seniority | Ads | Share | +|---|---|---| +| mid | 3 | 38 % | +| n/a | 2 | 25 % | +| senior | 1 | 12 % | +| junior | 1 | 12 % | +| lead | 1 | 12 % | + +## Tools — full market ranking + +| # | Item | Ads | Share | +|---|---|---|---| + +## Hard skills — full market ranking + +| # | Item | Ads | Share | +|---|---|---|---| + +## Methods — full market ranking + +| # | Item | Ads | Share | +|---|---|---|---| + +## Responsibilities — full market ranking + +| # | Item | Ads | Share | +|---|---|---|---| + +## Regional breakdown + +> **Corpus note:** 8 relevant ads in total — below the 100-ad target for a fully reliable ranking. Percentages above should be read as indicative. + +### US (us) + +**Insufficient evidence** — 8 ads (minimum for a regional ranking: 30). No ranking is reported for this region. + +### UK (gb) + +**Insufficient evidence** — 0 ads (minimum for a regional ranking: 30). No ranking is reported for this region. + +### EU/DACH (de, at, ch, nl) + +**Insufficient evidence** — 0 ads (minimum for a regional ranking: 30). No ranking is reported for this region. + + +## Job title variants in the market + +| Title | Ads | +|---|---| +| Biomedical Engineers (Remote) | 1 | +| Cell Biology/Bioengineering/Biotechnology SME (Non-Cryogenic Cell Preservation) - REMOTE | 1 | +| Manager - biomedical engineering at Exponent Philadelphia, PA | 1 | +| Open Rank Track Faculty, Biomedical Engineering (BME) | 1 | +| Open-Rank, Tenured/Tenure Track Bioengineering Faculty | 1 | +| Research Associate I - College of Engineering - Biomedical Engineering | 1 | +| Research Scientist in Biomedical Engineering | 1 | +| Senior Biomedical Engineer: DoD WMD Analytics (Onsite) | 1 | + +Methodology: entities extracted per ad ({hard_skills, tools, methods, responsibilities, seniority}), normalized, counted as DISTINCT ads per entity; report threshold ≥ 3 ads. Headline sections in skills.md/tools.md use the stricter ≥ 20 % threshold. diff --git a/references/profile.md b/references/profile.md new file mode 100644 index 0000000..631a730 --- /dev/null +++ b/references/profile.md @@ -0,0 +1,28 @@ +# Occupation profile — bioengineer + +- **ESCO URI:** http://data.europa.eu/esco/occupation/f9433fdb-dde1-46cf-9e91-b49d243946a7 +- **ESCO code:** 2149.5 +- **ISCO-08 group:** 2149 — Engineering professionals not elsewhere classified +- **O*NET-SOC:** 17-2031.00 — Bioengineers and Biomedical Engineers (match: exactMatch) + +## Description (ESCO) + +Bioengineers combine state of the art findings in the field of biology with engineering logics in order to develop solutions aimed at improving the well-being of society. They can develop improvement systems for natural resource conservation, agriculture, food production, genetic modification, and economic use. + +## Definition + +nan + +## Alternative labels + +- bioengineering consultant +- bioengineering technology adviser +- bioengineering adviser +- bio-engineer +- bioengineering technology expert +- bioengineering expert +- biological engineer +- bioengineering specialist +- bioengineering biotechnologist +- bioengineering technology specialist +- bioengineering technology consultant diff --git a/references/skills.md b/references/skills.md new file mode 100644 index 0000000..e8f3b5b --- /dev/null +++ b/references/skills.md @@ -0,0 +1,213 @@ +# Competences — bioengineer + +Source: ESCO v1.2.1 occupation-skill relations (http://data.europa.eu/esco/occupation/f9433fdb-dde1-46cf-9e91-b49d243946a7). + +## Essential + +- **adjust engineering designs** (skill/competence) +- **approve engineering design** (skill/competence) +- **bioeconomy** (knowledge) +- **biological chemistry** (knowledge) +- **biology** (knowledge) +- **biotechnology** (knowledge) +- **computational biology** (knowledge) +- **computational chemistry** (knowledge) +- **develop bioremediation techniques** (skill/competence) +- **engineering principles** (knowledge) +- **engineering processes** (knowledge) +- **genetics** (knowledge) +- **life sciences** (knowledge) +- **nanomaterials** (knowledge) +- **perform scientific research** (skill/competence) +- **synthetic biology** (knowledge) + +## Optional + +- advise on manufacturing problems (skill/competence) +- advise on nitrate pollution (skill/competence) +- analytical chemistry (knowledge) +- apply liquid chromatography (skill/competence) +- apply scientific methods (skill/competence) +- apply statistical analysis techniques (skill/competence) +- assess the feasibility of implementing developments (skill/competence) +- assist in clinical trials (skill/competence) +- biomedical engineering (knowledge) +- collect biological data (skill/competence) +- computer simulation (knowledge) +- conduct ecological research (skill/competence) +- cryopreservation (knowledge) +- design pharmaceutical manufacturing systems (skill/competence) +- design principles (knowledge) +- design prototypes (skill/competence) +- design scientific equipment (skill/competence) +- develop biocatalytic processes (skill/competence) +- develop biochemical manufacturing training materials (skill/competence) +- develop food production processes (skill/competence) +- develop pharmaceutical drugs (skill/competence) +- develop product design (skill/competence) +- develop test procedures (skill/competence) +- document analysis results (skill/competence) +- draft design specifications (skill/competence) +- ensure compliance with environmental legislation (skill/competence) +- ensure compliance with safety legislation (skill/competence) +- evaluate pharmaceutical manufacturing process (skill/competence) +- evolutionary biology (knowledge) +- examine engineering principles (skill/competence) +- execute analytical mathematical calculations (skill/competence) +- fermentation processes of food (knowledge) +- food materials (knowledge) +- food science (knowledge) +- food storage (knowledge) +- gas chromatography (knowledge) +- gather experimental data (skill/competence) +- gel permeation chromatography (knowledge) +- general medicine (knowledge) +- genomics (knowledge) +- high-performance liquid chromatography (knowledge) +- increase the impact of science on policy and society (skill/competence) +- industrial design (knowledge) +- industrial research and development (knowledge) +- interpret 2D plans (skill/competence) +- interpret 3D plans (skill/competence) +- laboratory techniques (knowledge) +- liaise with genetic laboratories (skill/competence) +- manage bioreactors (skill/competence) +- manage chemical testing procedures (skill/competence) +- mathematics (knowledge) +- medical devices materials (knowledge) +- packaging engineering (knowledge) +- perform laboratory tests (skill/competence) +- perform toxicological studies (skill/competence) +- pharmaceutical chemistry (knowledge) +- pharmaceutical drug development (knowledge) +- pharmaceutical industry (knowledge) +- pharmaceutical manufacturing quality systems (knowledge) +- processes of foods and beverages manufacturing (knowledge) +- product data management (knowledge) +- run laboratory simulations (skill/competence) +- safeguard biodiversity (skill/competence) +- scientific literature (knowledge) +- scientific research methodology (knowledge) +- statistical process control (knowledge) +- stem cells (knowledge) +- test procedures (knowledge) +- test samples for pollutants (skill/competence) +- toxicology (knowledge) +- use chromatography software (skill/competence) +- use technical drawing software (skill/competence) + + + +## Market evidence (job-ad analysis, 8 ads, as of 2026-07-09) + +Share of analyzed job ads mentioning the item (threshold ≥ 20 %). Source: JSearch/Adzuna APIs. + +### Hard skills + +- data analysis — **25 %** +- scientific research — **25 %** +- teaching — **25 %** +- technical due diligence — **12 %** +- technical evaluation — **12 %** +- risk management — **12 %** +- scenario development — **12 %** +- scientific analysis — **12 %** +- student supervision — **12 %** +- technical validation — **12 %** +- regulatory strategy assessment — **12 %** +- research program development — **12 %** +- nanomaterial synthesis — **12 %** +- project management — **12 %** +- proposal evaluation — **12 %** +- quality assurance — **12 %** +- question design — **12 %** +- regulatory analysis — **12 %** +- laboratory automation — **12 %** +- literature review — **12 %** +- machine learning — **12 %** +- market analysis — **12 %** +- computational modeling — **12 %** +- computational research — **12 %** +- mathematical modeling — **12 %** +- medical device regulation — **12 %** +- mentoring — **12 %** +- nanocarrier characterization — **12 %** +- organoid engineering — **12 %** +- polymeric drug delivery — **12 %** +- cell biology — **12 %** +- cell culture — **12 %** +- drug loading — **12 %** +- engineering methodology application — **12 %** +- experimental research — **12 %** +- bioengineering — **12 %** +- bio-engineering — **12 %** +- analytical chemistry — **12 %** +- biomedical systems analysis — **12 %** +- biotechnology — **12 %** +- block copolymer synthesis — **12 %** + +### Methods + +- bioreactor engineering — **12 %** +- biomanufacturing — **12 %** +- 3D bioprinting — **12 %** +- advanced technology development — **12 %** +- analytic methodologies — **12 %** +- experimental workflow development — **12 %** +- flow cytometry — **12 %** +- good manufacturing practices (GMP) — **12 %** +- cell culture — **12 %** +- microfluidics — **12 %** +- mechanobiology — **12 %** +- neuromechanics — **12 %** +- neuromodulation — **12 %** +- sensorimotor integration — **12 %** +- soft robotics — **12 %** +- technology commercialization — **12 %** +- tissue engineering — **12 %** +- total product lifecycle management — **12 %** +- cell and tissue engineering — **12 %** + +### Responsibilities + +- undergraduate teaching — **12 %** +- university governance — **12 %** +- workflow integration — **12 %** +- student supervision — **12 %** +- synthesis optimization — **12 %** +- technical project participation — **12 %** +- technical proposal evaluation — **12 %** +- technical support — **12 %** +- staff career development — **12 %** +- student engagement — **12 %** +- research program development — **12 %** +- research program building — **12 %** +- publication contribution — **12 %** +- regulatory compliance — **12 %** +- regulatory review — **12 %** +- content creation — **12 %** +- material applicability assessment — **12 %** +- nanocarrier development — **12 %** +- practice leadership — **12 %** +- programmatic support — **12 %** +- project execution — **12 %** +- characterization of nanomaterials — **12 %** +- client marketing — **12 %** +- community service — **12 %** +- data analysis — **12 %** +- data synthesis — **12 %** +- defense support — **12 %** +- department participation — **12 %** +- documentation development — **12 %** +- graduate teaching — **12 %** +- group meeting participation — **12 %** +- intelligence analysis — **12 %** +- expertise development — **12 %** +- accuracy validation — **12 %** +- biomedical research — **12 %** +- asynchronous collaboration — **12 %** +- automation system testing — **12 %** +- briefing document generation — **12 %** +- business expansion — **12 %** + + diff --git a/references/tasks.md b/references/tasks.md new file mode 100644 index 0000000..9a0bc64 --- /dev/null +++ b/references/tasks.md @@ -0,0 +1,62 @@ +# Tasks & work activities — bioengineer + +Source: O*NET 30.3, occupation 17-2031.00 (Bioengineers and Biomedical Engineers). + +## Task statements + +- **[Core]** Conduct training or in-services to educate clinicians and other personnel on proper use of equipment. +- **[Core]** Write documents describing protocols, policies, standards for use, maintenance, and repair of medical equipment. +- **[Core]** Collaborate with manufacturing or quality assurance staff to prepare product specification or safety sheets, standard operating procedures, user manuals, or qualification and validation reports. +- **[Core]** Communicate with bioregulatory authorities regarding licensing or compliance responsibilities. +- **[Core]** Communicate with suppliers regarding the design or specifications of bioproduction equipment, instrumentation, or materials. +- **[Core]** Confer with research and biomanufacturing personnel to ensure the compatibility of design and production. +- **[Core]** Consult with chemists or biologists to develop or evaluate novel technologies. +- **[Core]** Design or conduct follow-up experimentation, based on generated data, to meet established process objectives. +- **[Core]** Design or develop medical diagnostic or clinical instrumentation, equipment, or procedures, using the principles of engineering and biobehavioral sciences. +- **[Core]** Develop methodologies for transferring procedures or biological processes from laboratories to commercial-scale manufacturing production. +- **[Core]** Develop statistical models or simulations, using statistical or modeling software. +- **[Core]** Maintain databases of experiment characteristics or results. +- **[Core]** Manage teams of engineers by creating schedules, tracking inventory, creating or using budgets, or overseeing contract obligations or deadlines. +- **[Core]** Prepare project plans for equipment or facility improvements, including time lines, budgetary estimates, or capital spending requests. +- **[Core]** Prepare technical reports, data summary documents, or research articles for scientific publication, regulatory submissions, or patent applications. +- **[Core]** Read current scientific or trade literature to stay abreast of scientific, industrial, or technological advances. +- **[Core]** Recommend process formulas, instrumentation, or equipment specifications, based on results of bench or pilot experimentation. +- **[Core]** Evaluate the safety, efficiency, and effectiveness of biomedical equipment. +- **[Core]** Advise hospital administrators on the planning, acquisition, and use of medical equipment. +- **[Core]** Research new materials to be used for products, such as implanted artificial organs. +- **[Core]** Develop models or computer simulations of human biobehavioral systems to obtain data for measuring or controlling life processes. +- **[Core]** Conduct research, along with life scientists, chemists, and medical scientists, on the engineering aspects of the biological systems of humans and animals. +- **[Core]** Adapt or design computer hardware or software for medical science uses. +- **[Supplemental]** Advise manufacturing staff regarding problems with fermentation, filtration, or other bioproduction processes. +- **[Supplemental]** Design and deliver technology, such as prosthetic devices, to assist people with disabilities. +- **[Supplemental]** Design or direct bench or pilot production experiments to determine the scale of production methods that optimize product yield and minimize production costs. +- **[Supplemental]** Develop bioremediation processes to reduce pollution, protect the environment, or treat waste products. +- **[Supplemental]** Lead studies to examine or recommend changes in process sequences or operation protocols. +- **[Supplemental]** Review existing manufacturing processes to identify opportunities for yield improvement or reduced process variation. +- **[Supplemental]** Analyze new medical procedures to forecast likely outcomes. + +## Detailed work activities + +- Advise customers on the use of products or services. +- Analyze operational data to evaluate operations, processes or products. +- Communicate technical information to suppliers, contractors, or regulatory agencies. +- Confer with technical personnel to prepare designs or operational plans. +- Create models of engineering designs or methods. +- Design medical devices or appliances. +- Develop operational methods or processes that use green materials or emphasize sustainability. +- Develop software or computer applications. +- Develop technical methods or processes. +- Devise research or testing protocols. +- Estimate operational costs. +- Estimate time requirements for development or production projects. +- Evaluate characteristics of equipment or systems. +- Maintain operational records or records systems. +- Prepare contracts, disclosures, or applications. +- Prepare detailed work plans. +- Prepare procedural documents. +- Prepare technical reports for internal use. +- Recommend technical design or process changes to improve efficiency, quality, or performance. +- Research engineering aspects of biological or chemical processes. +- Supervise engineering or other technical personnel. +- Train personnel on proper operational procedures. +- Update technical knowledge. diff --git a/references/tools.md b/references/tools.md new file mode 100644 index 0000000..ae8ee22 --- /dev/null +++ b/references/tools.md @@ -0,0 +1,140 @@ +# Tools & technology — bioengineer + +Source: O*NET 30.3 'Software Skills' for 17-2031.00. + +| Software | Category | Hot technology | +|---|---|---| +| SAS | Analytical or scientific software | yes | +| The MathWorks MATLAB | Analytical or scientific software | yes | +| Splunk Enterprise | Cloud-based management software | yes | +| Autodesk AutoCAD | Computer aided design CAD software | yes | +| Dassault Systemes SolidWorks | Computer aided design CAD software | yes | +| Microsoft Access | Data base user interface and query software | yes | +| Oracle Database | Data base user interface and query software | yes | +| Structured query language SQL | Data base user interface and query software | yes | +| C | Development environment software | yes | +| Microsoft Azure software | Development environment software | yes | +| Microsoft Visual Basic | Development environment software | yes | +| Microsoft Outlook | Electronic mail software | yes | +| Extensible markup language XML | Enterprise application integration software | yes | +| Microsoft Teams | Enterprise application integration software | yes | +| SAP software | Enterprise resource planning ERP software | yes | +| Adobe Illustrator | Graphics or photo imaging software | yes | +| Adobe Photoshop | Graphics or photo imaging software | yes | +| C++ | Object or component oriented development software | yes | +| Oracle Java | Object or component oriented development software | yes | +| Python | Object or component oriented development software | yes | +| R | Object or component oriented development software | yes | +| Microsoft Office software | Office suite software | yes | +| Linux | Operating system software | yes | +| Microsoft Windows | Operating system software | yes | +| Red Hat Enterprise Linux | Operating system software | yes | +| UNIX | Operating system software | yes | +| Microsoft PowerPoint | Presentation software | yes | +| Microsoft Visio | Process mapping and design software | yes | +| Microsoft Project | Project management software | yes | +| Microsoft Excel | Spreadsheet software | yes | +| Hypertext markup language HTML | Web platform development software | yes | +| JavaScript | Web platform development software | yes | +| Microsoft Word | Word processing software | yes | +| ANSYS simulation software | Analytical or scientific software | | +| ApE A Plasmid Editor | Analytical or scientific software | | +| AspenTech HYSYS | Analytical or scientific software | | +| Biomechanical modeling software | Analytical or scientific software | | +| Calculating optimum maintenance parameters COMPARE | Analytical or scientific software | | +| Calibration software | Analytical or scientific software | | +| Circuit simulation software | Analytical or scientific software | | +| Common cause failure assessment software | Analytical or scientific software | | +| Computational fluid dynamics CFD software | Analytical or scientific software | | +| Computational modeling software | Analytical or scientific software | | +| Criticality analysis software | Analytical or scientific software | | +| Dyadem FMEA Pro-6 | Analytical or scientific software | | +| Electromechanical testing analysis software | Analytical or scientific software | | +| Embedded systems testing software | Analytical or scientific software | | +| Failure mode and effects analysis FMEA software | Analytical or scientific software | | +| Failure rate data in perspective FARADIP software | Analytical or scientific software | | +| Fault modeling software | Analytical or scientific software | | +| Fault tree analysis FTA software | Analytical or scientific software | | +| Finite element analysis FEA software | Analytical or scientific software | | +| Finite element method FEM software | Analytical or scientific software | | +| Force platform software | Analytical or scientific software | | +| Force sensitive applications FSA software | Analytical or scientific software | | +| Fourier transform infrared FTIR software | Analytical or scientific software | | +| Functional modeling software | Analytical or scientific software | | +| Hierarchical simulation program with integrated circuit emphasis HSPICE | Analytical or scientific software | | +| Human modeling software | Analytical or scientific software | | +| Image analysis software | Analytical or scientific software | | +| Intelligen SuperPro Designer | Analytical or scientific software | | +| Laboratory information management system LIMS | Analytical or scientific software | | +| Maplesoft Maple | Analytical or scientific software | | +| Materials testing software | Analytical or scientific software | | +| MathWorks Simulink | Analytical or scientific software | | +| Mean time between failures MBTF software | Analytical or scientific software | | +| Minitab | Analytical or scientific software | | +| Molecular simulation software | Analytical or scientific software | | +| Motion analysis software | Analytical or scientific software | | +| Neural network modeling software | Analytical or scientific software | | +| Numerical analysis software | Analytical or scientific software | | +| Polymath Software POLYMATH | Analytical or scientific software | | +| Preventive maintenance software | Analytical or scientific software | | +| Reliability centered maintenance RCM software | Analytical or scientific software | | +| Root cause analysis software | Analytical or scientific software | | +| SAS JMP | Analytical or scientific software | | +| Simulation program with integrated circuit emphasis SPICE | Analytical or scientific software | | +| SNOINO RCM Pro | Analytical or scientific software | | +| SNOINO Ttree | Analytical or scientific software | | +| Stochastic modeling software | Analytical or scientific software | | +| Stratasys FDM MedModeler | Analytical or scientific software | | +| Systems analysis programs for hands on integrated reliability evaluation software SAPHIRE | Analytical or scientific software | | +| Technis BETAPLUS | Analytical or scientific software | | +| Test automation software | Analytical or scientific software | | +| Three-dimensional motion capture software | Analytical or scientific software | | +| Wolfram Research Mathematica | Analytical or scientific software | | +| Equipment compliance testing software | Compliance software | | +| Bioreactor Design | Computer aided design CAD software | | +| Cadence Allegro Design Entry Capture and Capture CIS | Computer aided design CAD software | | +| Cadence Encounter Test | Computer aided design CAD software | | +| Electronic design automation EDA software | Computer aided design CAD software | | +| Mathsoft Mathcad | Computer aided design CAD software | | +| Mentor Graphics software | Computer aided design CAD software | | +| OrCAD Capture | Computer aided design CAD software | | +| PTC Creo Elements/Pro | Computer aided design CAD software | | +| PTC Pro/ENGINEER Wildfire | Computer aided design CAD software | | +| Schematic design entry software | Computer aided design CAD software | | +| Zuken electrical design software | Computer aided design CAD software | | +| Rapid prototyping software | Computer aided manufacturing CAM software | | +| IBM Rational ClearCase | Configuration management software | | +| SAP BusinessObjects Crystal Reports | Data base reporting software | | +| Failure rate database software | Data base user interface and query software | | +| Thomson Reuters EndNote | Data base user interface and query software | | +| Ada | Development environment software | | +| Advanced computer simulation language ACSL | Development environment software | | +| Hardware description language HDL | Development environment software | | +| IBM Rational ClearQuest | Development environment software | | +| Integrated development environment IDE software | Development environment software | | +| National Instruments LabVIEW | Development environment software | | +| Software development tools | Development environment software | | +| Verilog | Development environment software | | +| Rapid application development RAD software | Enterprise application integration software | | +| Ab Initio | Enterprise resource planning ERP software | | +| ERP software | Enterprise resource planning ERP software | | +| NeuroSolutions for MatLab | Expert system software | | +| ImageJ | Graphics or photo imaging software | | +| ADInstruments LabChart | Medical software | | +| Electromyograph analysis software | Medical software | | +| Gait analysis software | Medical software | | +| Instrument control software | Medical software | | +| Instrument validation software | Medical software | | +| Medical imaging software | Medical software | | +| Medical information software | Medical software | | +| Virtual instrument software | Medical software | | +| Diagramming software | Pattern design software | | +| Lucidchart | Process mapping and design software | | +| Defect tracking software | Program testing software | | +| System testing software | Program testing software | | +| User interface design software | Program testing software | | +| Project estimation software | Project management software | | +| IBM Rational RequisitePro | Requirements analysis and system architecture software | | +| Requirements management software | Requirements analysis and system architecture software | | +| Unified modeling language UML | Requirements analysis and system architecture software | | +| Hypertext preprocessor PHP | Web platform development software | |