From 083f6b953e04576824fd723debd8fa18d58a9ec4 Mon Sep 17 00:00:00 2001 From: skillfactor-pipeline Date: Fri, 14 Aug 2026 17:08:48 +0200 Subject: [PATCH] feat: biomedical-scientist skill package v0.1.0 --- PROVENANCE.md | 31 +++++ SKILL.md | 70 +++++++++++ manifest.json | 196 +++++++++++++++++++++++++++++ references/ai-skills.md | 266 ++++++++++++++++++++++++++++++++++++++++ references/market.md | 128 +++++++++++++++++++ references/profile.md | 30 +++++ references/skills.md | 173 ++++++++++++++++++++++++++ references/tasks.md | 47 +++++++ references/tools.md | 123 +++++++++++++++++++ 9 files changed, 1064 insertions(+) create mode 100644 PROVENANCE.md create mode 100644 SKILL.md create mode 100644 manifest.json create mode 100644 references/ai-skills.md create mode 100644 references/market.md create mode 100644 references/profile.md create mode 100644 references/skills.md create mode 100644 references/tasks.md create mode 100644 references/tools.md diff --git a/PROVENANCE.md b/PROVENANCE.md new file mode 100644 index 0000000..3daf989 --- /dev/null +++ b/PROVENANCE.md @@ -0,0 +1,31 @@ +# Data provenance — biomedical-scientist + +Where the content of this skill package comes from, counted by +content items (tasks, competences, tools, evidence entries, curated +knowledge). Rendered live by Gitea: + +```mermaid +%%{init: {'theme':'base','themeVariables':{'pie1':'#f9a825','pie2':'#1e88e5','pie3':'#ff355e','pie4':'#d97757','pie5':'#8e24aa','pieOuterStrokeWidth':'0px','pieSectionTextColor':'#fff'}}}%% +pie showData + title Content sources — biomedical-scientist + "ESCO (occupation & competences)" : 128 + "O*NET (tasks & tools)" : 141 + "Job boards (market evidence)" : 96 + "Anthropic official Claude skills" : 5 + "External AI skill packs (mapped)" : 138 +``` + +| Source | Items | Share | Files | +|---|---|---|---| +| ESCO (occupation & competences) | 128 | 25.2 % | references/profile.md, references/skills.md | +| O*NET (tasks & tools) | 141 | 27.8 % | references/tasks.md, references/tools.md | +| Job boards (market evidence) | 96 | 18.9 % | references/market.md (full report) + "Market evidence" headline sections | +| Wikipedia & AI expert curation | 0 | 0.0 % | glossary, literature, usecases, intake, quality, evals/ | +| Anthropic official Claude skills | 5 | 1.0 % | references/ai-skills.md, section "anthropics/skills" (official Claude Code skills) | +| External AI skill packs (mapped) | 138 | 27.2 % | references/ai-skills.md (per-source attribution inside) | +| Stack Exchange practitioner Q&A (CC-BY-SA) | 0 | 0.0 % | references/practitioner-qa.md (per-entry attribution inside) | + +Licensing: O*NET (USDOL/ETA, CC BY 4.0) · ESCO (© European Union) · +job-ad evidence via official APIs (JSearch/Adzuna) · Wikipedia content +paraphrased with source URLs — never copied · external AI skills are +linked, not copied (Apache-2.0/MIT/source-available, see ai-skills.md). diff --git a/SKILL.md b/SKILL.md new file mode 100644 index 0000000..84ba79f --- /dev/null +++ b/SKILL.md @@ -0,0 +1,70 @@ +--- +name: biomedical-scientist +description: "Occupational skill for the role 'biomedical scientist' (also: biomedical doctor, practitioner in biomedical science, clinical embryologist, blood bank technology specialist, scientist in biomedicine, analyst in biomedical science). Use when the user asks for typical biomedical scientist work such as: Review cases by analyzing autopsies, laboratory findings, or case investigation reports.; Manage medical laboratories.; Read current literature, talk with colleagues, or participate in professional organizations or conferences to keep abreast of developments in pathology." +--- + +# Biomedical Scientist + +Biomedical scientists perform all laboratory methods required as part of medical examination, monitoring, treatment, and research activities which involves designing, planning, organizing, applying, evaluating, interpreting and validating all analytical processes. They develop their activity in several fields of expertise such as haematology, microbiology, clinical immunology, cytopathology, histopathology, immunohistochemistry, and clinical biochemistry among others. This requires the application of qualitative and quantitative laboratory methods, including image analysis and digital pathology, to provide an investigative report and diagnostic opinion on products of a biological nature. + +## Core workflow + +1. Review cases by analyzing autopsies, laboratory findings, or case investigation reports. +2. Manage medical laboratories. +3. Read current literature, talk with colleagues, or participate in professional organizations or conferences to keep abreast of developments in pathology. +4. Develop or adopt new tests or instruments to improve diagnosis of diseases. +5. Educate physicians, students, and other personnel in medical laboratory professions, such as medical technology, cytotechnology, or histotechnology. +6. Perform autopsies to determine causes of deaths. +7. Plan and supervise the work of the pathology staff, residents, or visiting pathologists. +8. Identify the etiology, pathogenesis, morphological change, and clinical significance of diseases. + +## How to use this skill + +- Read [references/profile.md](references/profile.md) for the occupation profile and scope. +- Consult [references/tasks.md](references/tasks.md) for the full task and activity inventory. +- Check [references/skills.md](references/skills.md) for essential vs. optional competences. +- Check [references/tools.md](references/tools.md) for the software commonly used in this role. +- See [references/ai-skills.md](references/ai-skills.md) — matched external AI agent skills (per-source attribution). + +## Key competences (essential) + +- accept own accountability +- adhere to organisational guidelines +- advise on healthcare users' informed consent +- analyse body fluids +- analyse cell cultures +- analytical methods in biomedical sciences +- apply context specific clinical competences +- apply good clinical practices +- apply organisational techniques +- apply safety procedures in laboratory +- apply scientific methods +- assist in the production of laboratory documentation +- automated analysers in the medical laboratory +- bioethics +- biological chemistry + +## Hot technologies + +- Microsoft Access +- SAP software +- Microsoft Office software +- Microsoft PowerPoint +- Microsoft Excel + + + + +## Hot technologies + +Top tools from 33 gated job ads (see references/market.md, as of 2026-07-09): + +- Microsoft Excel — 48 % +- Microsoft PowerPoint — 48 % +- Microsoft Word — 48 % +- digital pathology program — 39 % + + + +--- +*Sources: ESCO v1.2.1 (http://data.europa.eu/esco/occupation/2e8820ba-5b2d-4572-92a1-942dbd02a6d6), O*NET 30.3 (29-1222.00). See manifest.json for licensing/attribution.* diff --git a/manifest.json b/manifest.json new file mode 100644 index 0000000..4bc54d1 --- /dev/null +++ b/manifest.json @@ -0,0 +1,196 @@ +{ + "name": "biomedical-scientist", + "title": "biomedical scientist", + "version": "0.1.0", + "layer": "core", + "language": "en", + "generated": "2026-07-07", + "ids": { + "esco_uri": "http://data.europa.eu/esco/occupation/2e8820ba-5b2d-4572-92a1-942dbd02a6d6", + "esco_code": "2269.13", + "isco_group": "2269", + "onet_soc": "29-1222.00", + "crosswalk_match": "closeMatch" + }, + "sources": [ + { + "name": "ESCO", + "version": "1.2.1", + "url": "https://esco.ec.europa.eu/" + }, + { + "name": "O*NET", + "version": "30.3", + "url": "https://www.onetcenter.org/", + "license": "CC BY 4.0" + } + ], + "attribution": "This package includes information from the O*NET Database (v30.3) by the U.S. Department of Labor, Employment and Training Administration (USDOL/ETA), CC BY 4.0. skillfactor is not endorsed by USDOL/ETA. ESCO data (v1.2.1) (c) European Union, used per the ESCO download conditions: https://esco.ec.europa.eu/en/use-esco/download", + "counts": { + "tasks": 19, + "dwas": 19, + "skills_essential": 98, + "skills_optional": 29, + "software": 102 + }, + "enrichment_ai_skills": { + "generated": "2026-07-14", + "method": "deterministic mapping (ISCO prefix + title/competence keywords)", + "sources": { + "anthropics/skills": { + "repo": "https://github.com/anthropics/skills", + "commit": "f6656c1", + "license": "Apache-2.0; the document skills (docx/pdf/pptx/xlsx) are source-available \u2014 see the LICENSE.txt in the upstream skill folder", + "skills": 2 + }, + "K-Dense-AI/claude-scientific-skills": { + "repo": "https://github.com/K-Dense-AI/claude-scientific-skills", + "commit": "4d97e29", + "license": "MIT", + "skills": 5 + }, + "foryourhealth111-pixel/Vibe-Skills": { + "repo": "https://github.com/foryourhealth111-pixel/Vibe-Skills", + "commit": "34429a8", + "license": "Apache-2.0", + "skills": 5 + }, + "K-Dense-AI/scientific-agent-skills": { + "repo": "https://github.com/K-Dense-AI/scientific-agent-skills", + "commit": "4d97e29", + "license": "MIT", + "skills": 5 + }, + "davila7/claude-code-templates": { + "repo": "https://github.com/davila7/claude-code-templates", + "commit": "fa79251", + "license": "MIT", + "skills": 12 + }, + "brycewang-stanford/Auto-Empirical-Research-Skills": { + "repo": "https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills", + "commit": "85bf545", + "license": "CC-BY-4.0", + "skills": 11 + }, + "a5c-ai/babysitter": { + "repo": "https://github.com/a5c-ai/babysitter", + "commit": "44a5d58b", + "license": "MIT", + "skills": 10 + }, + "jeremylongshore/claude-code-plugins-plus-skills": { + "repo": "https://github.com/jeremylongshore/claude-code-plugins-plus-skills", + "commit": "e112938a", + "license": "MIT", + "skills": 12 + }, + "mohitagw15856/pm-claude-skills": { + "repo": "https://github.com/mohitagw15856/pm-claude-skills", + "commit": "876fa30", + "license": "MIT", + "skills": 1 + }, + "alirezarezvani/claude-skills": { + "repo": "https://github.com/alirezarezvani/claude-skills", + "commit": "0241f43", + "license": "MIT", + "skills": 5 + }, + "infrasity-labs/dev-gtm-claude-skills": { + "repo": "https://github.com/infrasity-labs/dev-gtm-claude-skills", + "commit": "02cfefb", + "license": "MIT", + "skills": 2 + }, + "AgriciDaniel/claude-seo": { + "repo": "https://github.com/AgriciDaniel/claude-seo", + "commit": "6cf1ea9", + "license": "MIT", + "skills": 1 + }, + "nexu-io/open-design": { + "repo": "https://github.com/nexu-io/open-design", + "commit": "4b66023", + "license": "Apache-2.0", + "skills": 1 + }, + "AgriciDaniel/claude-blog": { + "repo": "https://github.com/AgriciDaniel/claude-blog", + "commit": "49842ea", + "license": "MIT", + "skills": 1 + }, + "mvanhorn/last30days-skill": { + "repo": "https://github.com/mvanhorn/last30days-skill", + "commit": "4b02791", + "license": "MIT", + "skills": 1 + }, + "parcadei/Continuous-Claude-v3": { + "repo": "https://github.com/parcadei/Continuous-Claude-v3", + "commit": "d07ff4b", + "license": "MIT", + "skills": 1 + }, + "vibeeval/vibecosystem": { + "repo": "https://github.com/vibeeval/vibecosystem", + "commit": "cea9462", + "license": "MIT", + "skills": 1 + }, + "mukul975/Anthropic-Cybersecurity-Skills": { + "repo": "https://github.com/mukul975/Anthropic-Cybersecurity-Skills", + "commit": "673da1f", + "license": "Apache-2.0", + "skills": 1 + }, + "nWave-ai/nWave": { + "repo": "https://github.com/nWave-ai/nWave", + "commit": "1d0f13c", + "license": "MIT", + "skills": 1 + }, + "ljagiello/ctf-skills": { + "repo": "https://github.com/ljagiello/ctf-skills", + "commit": "d19f35f", + "license": "MIT", + "skills": 1 + }, + "zebbern/claude-code-guide": { + "repo": "https://github.com/zebbern/claude-code-guide", + "commit": "d2c5280", + "license": "MIT", + "skills": 1 + } + }, + "total_skills": 80, + "tiers": { + "core": 78, + "adjacent": 2 + } + }, + "provenance": { + "items": { + "esco": 128, + "onet": 141, + "jobads": 96, + "wiki_ai": 0, + "anthropic": 5, + "ai_skills": 138, + "stackx": 0 + }, + "share_percent": { + "esco": 25.2, + "onet": 27.8, + "jobads": 18.9, + "wiki_ai": 0.0, + "anthropic": 1.0, + "ai_skills": 27.2, + "stackx": 0.0 + }, + "method": "content items per source category" + }, + "collar": "white", + "computer_work": true +} \ No newline at end of file diff --git a/references/ai-skills.md b/references/ai-skills.md new file mode 100644 index 0000000..d3ec7b3 --- /dev/null +++ b/references/ai-skills.md @@ -0,0 +1,266 @@ +# External AI agent skills — biomedical-scientist + +Proven, publicly available AI agent skills mapped to this occupation. +Nothing is copied from the sources: every entry is a name, a one-line +summary and a link to the upstream skill package. Each section names +its source repository, commit, license and retrieval date. + +**Tiers:** `core` = the skill directly exercises a top market hard +skill, tool or method (from gated job-ad evidence) or an essential +ESCO competence of this occupation; `adjacent` = +plausibly useful, secondary. Entries are capped at 12 per source +and 80 in total per occupation (core first, +strongest matches survive); everything beyond the caps is excluded +and logged in the pipeline audit trail, not in this package. + +_Matched deterministically (ISCO group + title/competence keywords, +tiered against market evidence + ESCO essentials) by +`pipeline/p5_enrich_ai_skills.py` on 2026-07-14._ + +## Source: anthropics/skills + +- Repository: [https://github.com/anthropics/skills](https://github.com/anthropics/skills) (commit `f6656c1`, retrieved 2026-07-14) +- License: Apache-2.0; the document skills (docx/pdf/pptx/xlsx) are source-available — see the LICENSE.txt in the upstream skill folder + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `docx` | adjacent | Use this skill whenever the user wants to create, read, edit, or manipulate Word documents (.docx files) or Word templates (.dotx files). Triggers include: any mention of 'Word doc', 'word document', '.docx', '.dotx', or requests to … | [source](https://github.com/anthropics/skills/tree/main/skills/docx) | +| `pdf` | adjacent | Use this skill whenever the user wants to do anything with PDF files. This includes reading or extracting text/tables from PDFs, combining or merging multiple PDFs into one, splitting PDFs apart, rotating pages, adding watermarks, creating … | [source](https://github.com/anthropics/skills/tree/main/skills/pdf) | + +## Source: a5c-ai/babysitter + +- Repository: [https://github.com/a5c-ai/babysitter](https://github.com/a5c-ai/babysitter) (commit `44a5d58b`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `population-health-stratification` | core | Stratify patient populations by risk level using claims data, clinical data, and social determinants to prioritize care management interventions | [source](https://github.com/a5c-ai/babysitter/tree/44a5d58b/library/specializations/domains/social-sciences-humanities/healthcare/skills/population-health-stratification) | +| `health-data-integration` | core | Facilitate interoperability between health IT systems including EHR, HIE, and clinical decision support through HL7, FHIR, and other healthcare data standards | [source](https://github.com/a5c-ai/babysitter/tree/44a5d58b/library/specializations/domains/social-sciences-humanities/healthcare/skills/health-data-integration) | +| `medical-agent` | core | Build medical AI agents for clinical decision support, medical record summarization, diagnostic assistance, and healthcare workflow automation. | [source](https://github.com/a5c-ai/babysitter/tree/44a5d58b/library/specializations/ai-agents-conversational/skills/medical-agent) | +| `clinical-workflow-analysis` | core | Analyze clinical workflows to identify inefficiencies, bottlenecks, and improvement opportunities using Lean healthcare principles and value stream mapping techniques | [source](https://github.com/a5c-ai/babysitter/tree/44a5d58b/library/specializations/domains/social-sciences-humanities/healthcare/skills/clinical-workflow-analysis) | +| `bioethics-deliberation` | core | Apply bioethical principles (autonomy, beneficence, non-maleficence, justice) and case-based reasoning to healthcare decisions, research protocols, and clinical dilemmas | [source](https://github.com/a5c-ai/babysitter/tree/44a5d58b/library/specializations/domains/social-sciences-humanities/philosophy/skills/bioethics-deliberation) | +| `iso-standards-compliance-checker` | core | Medical device standards compliance verification skill for ISO 13485, ISO 14971, IEC 62304, IEC 60601, and related standards | [source](https://github.com/a5c-ai/babysitter/tree/44a5d58b/library/specializations/domains/science/biomedical-engineering/skills/iso-standards-compliance-checker) | +| `image-algorithm-validator` | core | Medical image processing algorithm validation skill for segmentation, detection, and analysis algorithms | [source](https://github.com/a5c-ai/babysitter/tree/44a5d58b/library/specializations/domains/science/biomedical-engineering/skills/image-algorithm-validator) | +| `iso14971-risk-analyzer` | core | Comprehensive risk management skill implementing ISO 14971:2019 methodology for medical device risk analysis | [source](https://github.com/a5c-ai/babysitter/tree/44a5d58b/library/specializations/domains/science/biomedical-engineering/skills/iso14971-risk-analyzer) | +| `extractables-leachables-analyzer` | core | E&L study design and data analysis skill for chemical characterization of medical devices | [source](https://github.com/a5c-ai/babysitter/tree/44a5d58b/library/specializations/domains/science/biomedical-engineering/skills/extractables-leachables-analyzer) | +| `statistical-testing` | core | Apply statistical hypothesis testing, significance analysis, A/B test evaluation, and distribution comparisons for data science workflows. | [source](https://github.com/a5c-ai/babysitter/tree/44a5d58b/library/specializations/data-science-ml/skills/statistical-testing) | + +## Source: AgriciDaniel/claude-blog + +- Repository: [https://github.com/AgriciDaniel/claude-blog](https://github.com/AgriciDaniel/claude-blog) (commit `49842ea`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `blog-audit` | core | Full-site blog health assessment scanning all blog files for quality scores, orphan pages, topic cannibalization, stale content, and AI citation readiness. Spawns parallel subagents for comprehensive analysis. Produces per-post scores and … | [source](https://github.com/AgriciDaniel/claude-blog/tree/49842ea/skills/blog-audit) | + +## Source: AgriciDaniel/claude-seo + +- Repository: [https://github.com/AgriciDaniel/claude-seo](https://github.com/AgriciDaniel/claude-seo) (commit `6cf1ea9`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `seo-local` | core | Local SEO analysis covering Google Business Profile optimization, NAP consistency, citation health, review signals, local schema markup, location page quality, multi-location SEO, and industry-specific recommendations. Detects business … | [source](https://github.com/AgriciDaniel/claude-seo/tree/6cf1ea9/skills/seo-local) | + +## Source: alirezarezvani/claude-skills + +- Repository: [https://github.com/alirezarezvani/claude-skills](https://github.com/alirezarezvani/claude-skills) (commit `0241f43`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `quality-documentation-manager` | core | Document control system management for medical device QMS. Covers document numbering, version control, change management, and 21 CFR Part 11 compliance. Use when working on document control procedures, change control workflows, document … | [source](https://github.com/alirezarezvani/claude-skills/tree/0241f43/ra-qm-team/skills/quality-documentation-manager) | +| `quality-manager-qms-iso13485` | core | ISO 13485 Quality Management System implementation and maintenance for medical device organizations. Provides QMS design, documentation control, internal auditing, CAPA management, and certification support. Use when working with medical … | [source](https://github.com/alirezarezvani/claude-skills/tree/0241f43/ra-qm-team/skills/quality-manager-qms-iso13485) | +| `risk-management-specialist` | core | Medical device risk management specialist implementing ISO 14971 throughout product lifecycle. Provides risk analysis, risk evaluation, risk control, and post-production information analysis. Use when user mentions risk management, ISO … | [source](https://github.com/alirezarezvani/claude-skills/tree/0241f43/ra-qm-team/skills/risk-management-specialist) | +| `capa-officer` | core | CAPA system management for medical device QMS. Covers root cause analysis, corrective action planning, effectiveness verification, and CAPA metrics. Use when running CAPA investigations, 5-Why analysis, fishbone diagrams, root cause … | [source](https://github.com/alirezarezvani/claude-skills/tree/0241f43/ra-qm-team/skills/capa-officer) | +| `fda-consultant-specialist` | core | FDA regulatory consultant for medical device companies. Provides 510(k)/PMA/De Novo pathway guidance, QMSR (21 CFR 820, which incorporates ISO 13485:2016 by reference since 2026-02-02; formerly QSR) compliance, HIPAA assessments, and … | [source](https://github.com/alirezarezvani/claude-skills/tree/0241f43/ra-qm-team/skills/fda-consultant-specialist) | + +## Source: brycewang-stanford/Auto-Empirical-Research-Skills + +- Repository: [https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills) (commit `85bf545`, retrieved 2026-07-14) +- License: CC-BY-4.0 + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `biomedical-skills` | core | 24 biomedical research skills. Trigger: medical research, clinical trials, genomics, bioinformatics. Design: domain databases, wet-lab/dry-lab methods, and ethical compliance guides. | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/domains/biomedical) | +| `medical-data-api` | core | Access FDA drug data and WHO global health statistics for research | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/domains/biomedical/medical-data-api) | +| `doctor` | core | System diagnostics and health checks for Diverga plugin. OpenClaw-style Check-Report-Fix pattern with 5-layer diagnostics. Triggers: /diverga:doctor, diverga doctor, system check, diagnose, 진단 | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/25-HosungYou-Diverga/skills/doctor) | +| `epidemiology-guide` | core | Epidemiological study designs, measures of association, and public health ana... | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/domains/biomedical/epidemiology-guide) | +| `numerical-methods-guide` | core | Apply numerical methods and scientific computing techniques | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/domains/math/numerical-methods-guide) | +| `medical-imaging-guide` | core | Medical image analysis with deep learning for research applications | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/domains/biomedical/medical-imaging-guide) | +| `econometrics-skills` | core | 12 econometrics skills. Trigger: causal analysis, regression models, treatment effects, panel data. Design: method-centric guides with R/Python code and diagnostic tests. | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/analysis/econometrics) | +| `lifelines` | core | Complete survival analysis library in Python. Handles right-censored data, Kaplan-Meier curves, and Cox regression. Standard for clinical trial analysis and epidemiology. | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/63-tondevrel-scientific-agent-skills/lifelines) | +| `med-researcher-r1-guide` | core | Medical deep research agent with reasoning chain analysis | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/domains/biomedical/med-researcher-r1-guide) | +| `clinical-research-guide` | core | Design clinical studies and report using CONSORT, STROBE guidelines | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/domains/biomedical/clinical-research-guide) | +| `law-skills` | core | 9 legal research skills. Trigger: legal research, case law analysis, regulatory compliance. Design: legal databases, citation networks, and judicial analytics tools. | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/domains/law) | + +## Source: davila7/claude-code-templates + +- Repository: [https://github.com/davila7/claude-code-templates](https://github.com/davila7/claude-code-templates) (commit `fa79251`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `treatment-plans` | core | Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/treatment-plans) | +| `clinical-reports` | core | Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/clinical-reports) | +| `mdr-745-specialist` | core | EU MDR 2017/745 regulation specialist and consultant for medical device requirement management. Provides comprehensive MDR compliance expertise, gap analysis, technical documentation guidance, clinical evidence requirements, and … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/enterprise-communication/mdr-745-specialist) | +| `biomni` | core | Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/biomni) | +| `quality-manager-qms-iso13485` | core | ISO 13485 Quality Management System specialist for medical device companies. Provides QMS implementation, maintenance, process optimization, and compliance expertise. Use for QMS design, documentation control, management review, internal … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/enterprise-communication/quality-manager-qms-iso13485) | +| `datacommons-client` | core | Work with Data Commons, a platform providing programmatic access to public statistical data from global sources. Use this skill when working with demographic data, economic indicators, health statistics, environmental data, or any public … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/datacommons-client) | +| `risk-management-specialist` | core | Senior Risk Management specialist for medical device companies implementing ISO 14971 risk management throughout product lifecycle. Provides risk analysis, risk evaluation, risk control, and post-production information analysis. Use for … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/enterprise-communication/risk-management-specialist) | +| `fda-consultant-specialist` | core | Senior FDA consultant and specialist for medical device companies including HIPAA compliance and requirement management. Provides FDA pathway expertise, QSR compliance, cybersecurity guidance, and regulatory submission support. Use for FDA … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/enterprise-communication/fda-consultant-specialist) | +| `histolab` | core | Digital pathology image processing toolkit for whole slide images (WSI). Use this skill when working with histopathology slides, processing H&E or IHC stained tissue images, extracting tiles from gigapixel pathology images, detecting … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/histolab) | +| `exploratory-data-analysis` | core | Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/exploratory-data-analysis) | +| `adaptyv` | core | Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/adaptyv) | +| `pylabrobot` | core | Laboratory automation toolkit for controlling liquid handlers, plate readers, pumps, heater shakers, incubators, centrifuges, and analytical equipment. Use this skill when automating laboratory workflows, programming liquid handling robots … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/pylabrobot) | + +## Source: foryourhealth111-pixel/Vibe-Skills + +- Repository: [https://github.com/foryourhealth111-pixel/Vibe-Skills](https://github.com/foryourhealth111-pixel/Vibe-Skills) (commit `34429a8`, retrieved 2026-07-14) +- License: Apache-2.0 + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `treatment-plans` | core | Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/treatment-plans) | +| `clinical-reports` | core | Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/clinical-reports) | +| `iso-13485-certification` | core | Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Systems. Use when users need help with ISO 13485 QMS documentation, including (1) conducting gap analysis of existing … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/iso-13485-certification) | +| `exploratory-data-analysis` | core | Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/exploratory-data-analysis) | +| `adaptyv` | core | Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/adaptyv) | + +## Source: infrasity-labs/dev-gtm-claude-skills + +- Repository: [https://github.com/infrasity-labs/dev-gtm-claude-skills](https://github.com/infrasity-labs/dev-gtm-claude-skills) (commit `02cfefb`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `seo-local` | core | Local SEO analysis covering Google Business Profile optimization, NAP consistency, citation health, review signals, local schema markup, location page quality, multi-location SEO, and industry-specific recommendations. Detects business … | [source](https://github.com/infrasity-labs/dev-gtm-claude-skills/tree/02cfefb/.claude/skills/seo-local) | +| `blog-audit` | core | Full-site blog health assessment scanning all blog files for quality scores, orphan pages, topic cannibalization, stale content, and AI citation readiness. Spawns parallel subagents for comprehensive analysis. Produces per-post scores and … | [source](https://github.com/infrasity-labs/dev-gtm-claude-skills/tree/02cfefb/.claude/skills/blog-audit) | + +## Source: jeremylongshore/claude-code-plugins-plus-skills + +- Repository: [https://github.com/jeremylongshore/claude-code-plugins-plus-skills](https://github.com/jeremylongshore/claude-code-plugins-plus-skills) (commit `e112938a`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `abridge-reference-architecture` | core | Implement Abridge reference architecture for clinical AI integration. Use when designing a new Abridge deployment, reviewing project structure, or planning multi-site health system rollouts with EHR integration. Trigger: "abridge … | [source](https://github.com/jeremylongshore/claude-code-plugins-plus-skills/tree/e112938a/plugins/saas-packs/abridge-pack/skills/abridge-reference-architecture) | +| `abridge-sdk-patterns` | core | Apply production-ready patterns for Abridge clinical AI integration. Use when building reusable Abridge client wrappers, implementing HIPAA-compliant error handling, or establishing team coding standards for healthcare AI. Trigger: … | [source](https://github.com/jeremylongshore/claude-code-plugins-plus-skills/tree/e112938a/plugins/saas-packs/abridge-pack/skills/abridge-sdk-patterns) | +| `attio-debug-bundle` | core | Collect Attio integration diagnostic evidence -- API health, scopes, object schema, and rate limit status -- for debugging or support tickets. Trigger: "attio debug", "attio support bundle", "attio diagnostic", "collect attio logs", "attio … | [source](https://github.com/jeremylongshore/claude-code-plugins-plus-skills/tree/e112938a/plugins/saas-packs/attio-pack/skills/attio-debug-bundle) | +| `flyio-debug-bundle` | core | Collect Fly.io debug evidence for support tickets including machine status, logs, health checks, volume state, and networking diagnostics. Trigger: "fly.io debug", "fly.io support", "fly.io diagnostic", "fly doctor". | [source](https://github.com/jeremylongshore/claude-code-plugins-plus-skills/tree/e112938a/plugins/saas-packs/flyio-pack/skills/flyio-debug-bundle) | +| `webflow-debug-bundle` | core | Collect Webflow debug evidence for support tickets and troubleshooting. Gathers SDK version, token validation, rate limit status, site connectivity, CMS health, and error logs into a single diagnostic bundle. Trigger with phrases like … | [source](https://github.com/jeremylongshore/claude-code-plugins-plus-skills/tree/e112938a/plugins/saas-packs/webflow-pack/skills/webflow-debug-bundle) | +| `perplexity-observability` | core | Set up monitoring for Perplexity Sonar API with latency, cost, citation quality, and error tracking. Use when implementing monitoring dashboards, setting up alerts, or tracking Perplexity API health in production. Trigger with phrases like … | [source](https://github.com/jeremylongshore/claude-code-plugins-plus-skills/tree/e112938a/plugins/saas-packs/perplexity-pack/skills/perplexity-observability) | +| `abridge-webhooks-events` | core | Implement Abridge webhook handling for clinical documentation events. Use when receiving note completion notifications, encounter status changes, provider enrollment events, or quality alert callbacks from Abridge. Trigger: "abridge … | [source](https://github.com/jeremylongshore/claude-code-plugins-plus-skills/tree/e112938a/plugins/saas-packs/abridge-pack/skills/abridge-webhooks-events) | +| `adobe-advanced-troubleshooting` | core | Apply advanced debugging techniques for Adobe API issues: IMS token introspection, Firefly job failure analysis, PDF Services error codes, and network-layer diagnostics for Adobe endpoints. Trigger with phrases like "adobe hard bug", … | [source](https://github.com/jeremylongshore/claude-code-plugins-plus-skills/tree/e112938a/plugins/saas-packs/adobe-pack/skills/adobe-advanced-troubleshooting) | +| `exa-advanced-troubleshooting` | core | Apply advanced debugging techniques for hard-to-diagnose Exa issues. Use when standard troubleshooting fails, investigating latency spikes, or preparing evidence bundles for Exa support escalation. Trigger with phrases like "exa hard bug", … | [source](https://github.com/jeremylongshore/claude-code-plugins-plus-skills/tree/e112938a/plugins/saas-packs/exa-pack/skills/exa-advanced-troubleshooting) | +| `perplexity-advanced-troubleshooting` | core | Apply advanced debugging techniques for hard-to-diagnose Perplexity Sonar API issues. Use when standard troubleshooting fails, investigating inconsistent citations, or preparing evidence for support escalation. Trigger with phrases like … | [source](https://github.com/jeremylongshore/claude-code-plugins-plus-skills/tree/e112938a/plugins/saas-packs/perplexity-pack/skills/perplexity-advanced-troubleshooting) | +| `abridge-security-basics` | core | Apply HIPAA-compliant security practices for Abridge clinical AI integrations. Use when securing PHI in transit/at rest, configuring access controls, implementing audit logging, or preparing for HIPAA security audits. Trigger: "abridge … | [source](https://github.com/jeremylongshore/claude-code-plugins-plus-skills/tree/e112938a/plugins/saas-packs/abridge-pack/skills/abridge-security-basics) | +| `onenote-debug-bundle` | core | Generate comprehensive diagnostic bundles for OneNote Graph API issues with request tracing and token analysis. Use when debugging OneNote API failures, filing Microsoft support tickets, or analyzing permission issues. Trigger with … | [source](https://github.com/jeremylongshore/claude-code-plugins-plus-skills/tree/e112938a/plugins/saas-packs/onenote-pack/skills/onenote-debug-bundle) | + +## Source: K-Dense-AI/claude-scientific-skills + +- Repository: [https://github.com/K-Dense-AI/claude-scientific-skills](https://github.com/K-Dense-AI/claude-scientific-skills) (commit `4d97e29`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `treatment-plans` | core | Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/treatment-plans) | +| `clinical-reports` | core | Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/clinical-reports) | +| `iso-13485-certification` | core | Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Systems. Use when users need help with ISO 13485 QMS documentation, including (1) conducting gap analysis of existing … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/iso-13485-certification) | +| `exploratory-data-analysis` | core | Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/exploratory-data-analysis) | +| `bgpt-paper-search` | core | Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server. Returns 25+ fields per paper including methods, results, sample sizes, quality scores, and conclusions. Use for … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/bgpt-paper-search) | + +## Source: K-Dense-AI/scientific-agent-skills + +- Repository: [https://github.com/K-Dense-AI/scientific-agent-skills](https://github.com/K-Dense-AI/scientific-agent-skills) (commit `4d97e29`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `treatment-plans` | core | Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/treatment-plans) | +| `clinical-reports` | core | Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/clinical-reports) | +| `iso-13485-certification` | core | Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Systems. Use when users need help with ISO 13485 QMS documentation, including (1) conducting gap analysis of existing … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/iso-13485-certification) | +| `exploratory-data-analysis` | core | Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/exploratory-data-analysis) | +| `bgpt-paper-search` | core | Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server. Returns 25+ fields per paper including methods, results, sample sizes, quality scores, and conclusions. Use for … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/bgpt-paper-search) | + +## Source: ljagiello/ctf-skills + +- Repository: [https://github.com/ljagiello/ctf-skills](https://github.com/ljagiello/ctf-skills) (commit `d19f35f`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `ctf-forensics` | core | Provides digital forensics and signal analysis techniques for CTF challenges. Use when analyzing disk images, memory dumps, event logs, network captures, cryptocurrency transactions, steganography, PDF analysis, Windows registry, … | [source](https://github.com/ljagiello/ctf-skills/tree/d19f35f/ctf-forensics) | + +## Source: mohitagw15856/pm-claude-skills + +- Repository: [https://github.com/mohitagw15856/pm-claude-skills](https://github.com/mohitagw15856/pm-claude-skills) (commit `876fa30`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `patient-communication` | core | Write clear, plain-English patient communications for any healthcare context. Use when asked to write a patient letter, patient information leaflet, appointment letter, test-results letter, discharge summary for patients, or health … | [source](https://github.com/mohitagw15856/pm-claude-skills/tree/876fa30/plugins/pm-research/skills/patient-communication) | + +## Source: mukul975/Anthropic-Cybersecurity-Skills + +- Repository: [https://github.com/mukul975/Anthropic-Cybersecurity-Skills](https://github.com/mukul975/Anthropic-Cybersecurity-Skills) (commit `673da1f`, retrieved 2026-07-14) +- License: Apache-2.0 + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `analyzing-macro-malware-in-office-documents` | core | Analyzes malicious VBA macros embedded in Microsoft Office documents (Word, Excel, PowerPoint) to identify download cradles, payload execution, persistence mechanisms, and anti-analysis techniques. Uses olevba, oledump, and VBA … | [source](https://github.com/mukul975/Anthropic-Cybersecurity-Skills/tree/673da1f/skills/analyzing-macro-malware-in-office-documents) | + +## Source: mvanhorn/last30days-skill + +- Repository: [https://github.com/mvanhorn/last30days-skill](https://github.com/mvanhorn/last30days-skill) (commit `4b02791`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `last30days` | core | Research what people actually say about any topic in the last 30 days. Pulls posts and engagement from Reddit, X, YouTube, TikTok, Hacker News, Polymarket, GitHub, and the web. Includes a doctor health check to diagnose broken or missing … | [source](https://github.com/mvanhorn/last30days-skill/tree/4b02791/skills/last30days) | + +## Source: nexu-io/open-design + +- Repository: [https://github.com/nexu-io/open-design](https://github.com/nexu-io/open-design) (commit `4b66023`, retrieved 2026-07-14) +- License: Apache-2.0 + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `html-ppt-testing-safety-alert` | core | A hospital data-governance briefing: patient-data risk, the control framework, accountability, and the approval the board must give. Built as a decision-grade policy briefing deck for health-system board, regulators. | [source](https://github.com/nexu-io/open-design/tree/4b66023/design-templates/html-ppt-testing-safety-alert) | + +## Source: nWave-ai/nWave + +- Repository: [https://github.com/nWave-ai/nWave](https://github.com/nWave-ai/nWave) (commit `1d0f13c`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `nw-interviewing-techniques` | core | Mom Test questioning toolkit, JTBD analysis, interview conduct, assumption testing framework, and hypothesis design | [source](https://github.com/nWave-ai/nWave/tree/1d0f13c/nWave/skills/nw-interviewing-techniques) | + +## Source: parcadei/Continuous-Claude-v3 + +- Repository: [https://github.com/parcadei/Continuous-Claude-v3](https://github.com/parcadei/Continuous-Claude-v3) (commit `d07ff4b`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `mot` | core | System health check (MOT) for skills, agents, hooks, and memory | [source](https://github.com/parcadei/Continuous-Claude-v3/tree/d07ff4b/.claude/skills/mot) | + +## Source: vibeeval/vibecosystem + +- Repository: [https://github.com/vibeeval/vibecosystem](https://github.com/vibeeval/vibecosystem) (commit `cea9462`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `mot` | core | System health check (MOT) for skills, agents, hooks, and memory | [source](https://github.com/vibeeval/vibecosystem/tree/cea9462/skills/mot) | + +## Source: zebbern/claude-code-guide + +- Repository: [https://github.com/zebbern/claude-code-guide](https://github.com/zebbern/claude-code-guide) (commit `d2c5280`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `vc-industry-research` | core | Generate professional primary market / venture capital industry research reports, including sector deep-dives, investment memos, and market analysis. Produces detailed PDF reports covering TMT, consumer, healthcare, and industrials. … | [source](https://github.com/zebbern/claude-code-guide/tree/d2c5280/skills/vc-industry-research) | diff --git a/references/market.md b/references/market.md new file mode 100644 index 0000000..b0c0fd0 --- /dev/null +++ b/references/market.md @@ -0,0 +1,128 @@ +# Market evidence report — biomedical-scientist + +Source: **33 real job ads** (JSearch API, countries: us 33), extracted into the MSSQL evidence store; as of 2026-07-09. +This report contains extracted, aggregated facts only — no ad text is +reproduced (copyright / platform terms). + +## Seniority distribution + +| Seniority | Ads | Share | +|---|---|---| +| mid | 16 | 48 % | +| senior | 14 | 42 % | +| n/a | 2 | 6 % | +| junior | 1 | 3 % | + +## Tools — full market ranking + +| # | Item | Ads | Share | +|---|---|---|---| +| 1 | Microsoft Excel | 16 | 48 % | +| 2 | Microsoft PowerPoint | 16 | 48 % | +| 3 | Microsoft Word | 16 | 48 % | +| 4 | digital pathology program | 13 | 39 % | + +## Hard skills — full market ranking + +| # | Item | Ads | Share | +|---|---|---|---| +| 1 | data analysis | 18 | 55 % | +| 2 | experimental design | 17 | 52 % | +| 3 | cohort development | 16 | 48 % | +| 4 | human pathology | 16 | 48 % | +| 5 | pathology annotation | 16 | 48 % | +| 6 | regulatory compliance | 14 | 42 % | +| 7 | project management | 13 | 39 % | +| 8 | microtomy | 7 | 21 % | +| 9 | tissue processing | 7 | 21 % | +| 10 | slide staining | 4 | 12 % | +| 11 | embedding | 3 | 9 % | + +## Methods — full market ranking + +| # | Item | Ads | Share | +|---|---|---|---| +| 1 | standard operating procedures | 17 | 52 % | +| 2 | biospecimen handling | 13 | 39 % | +| 3 | histology | 13 | 39 % | +| 4 | image analytics | 13 | 39 % | +| 5 | microscopy | 13 | 39 % | +| 6 | digital pathology | 3 | 9 % | +| 7 | quality assurance | 3 | 9 % | +| 8 | regulatory compliance | 3 | 9 % | + +## Responsibilities — full market ranking + +| # | Item | Ads | Share | +|---|---|---|---| +| 1 | research project supervision | 16 | 48 % | +| 2 | pathology annotation | 14 | 42 % | +| 3 | report generation | 14 | 42 % | +| 4 | customer support | 13 | 39 % | +| 5 | data integrity maintenance | 13 | 39 % | +| 6 | laboratory operations | 13 | 39 % | +| 7 | pathologist support | 5 | 15 % | +| 8 | lab operations leadership | 3 | 9 % | +| 9 | project management | 3 | 9 % | + +## Regional breakdown + +> **Corpus note:** 33 relevant ads in total — below the 100-ad target for a fully reliable ranking. Percentages above should be read as indicative. + +### US (us) + +33 ads. + +**Top hard skills:** + +- data analysis — 55 % (18 ads) +- experimental design — 52 % (17 ads) +- cohort development — 48 % (16 ads) +- human pathology — 48 % (16 ads) +- pathology annotation — 48 % (16 ads) +- regulatory compliance — 42 % (14 ads) +- project management — 39 % (13 ads) +- microtomy — 21 % (7 ads) +- tissue processing — 21 % (7 ads) +- slide staining — 12 % (4 ads) + +**Top tools:** + +- Microsoft Excel — 48 % (16 ads) +- Microsoft PowerPoint — 48 % (16 ads) +- Microsoft Word — 48 % (16 ads) +- digital pathology program — 39 % (13 ads) + +**Seniority:** mid 48 % · senior 42 % · n/a 6 % · junior 3 % + +### UK (gb) + +**Insufficient evidence** — 0 ads (minimum for a regional ranking: 30). No ranking is reported for this region. + +### EU/DACH (de, at, ch, nl) + +**Insufficient evidence** — 0 ads (minimum for a regional ranking: 30). No ranking is reported for this region. + + +## Job title variants in the market + +| Title | Ads | +|---|---| +| Biomedical Scientist - Pathology & Biobank Core | 13 | +| Locum Biomedical Scientist in Histology - Lancaster | 3 | +| Biomedical Scientist – Pathology & Biobank Core | 2 | +| Medical Lab Scientist | 2 | +| Specialist Biomedical Scientist | 2 | +| 251783 (GH) Specialist Biomedical Scientist or Trainee Specialist Biomedical Scientist | 1 | +| Advanced Biomedical Scientist | 1 | +| Band 6 Biomedical Scientist | 1 | +| Biomedical Scientist - Pathology & Biobank Core. Job in Beverly Hills Musk Jobs | 1 | +| Biomedical Scientist - Relocation & Housing Support | 1 | +| Biomedical Scientist (Dissection) | 1 | +| Biomedical Scientist at Net2Source Inc. New Jersey | 1 | +| Biomedical Scientist: Relocation to Canada | 1 | +| Consultant Biomedical Scientist | 1 | +| Lancaster Histology Biomedical Scientist (Band 6) - Locum | 1 | +| Locum Biomedical Scientist | 1 | + +Methodology: entities extracted per ad ({hard_skills, tools, methods, responsibilities, seniority}), normalized, counted as DISTINCT ads per entity; report threshold ≥ 3 ads. Headline sections in skills.md/tools.md use the stricter ≥ 20 % threshold. diff --git a/references/profile.md b/references/profile.md new file mode 100644 index 0000000..06a1025 --- /dev/null +++ b/references/profile.md @@ -0,0 +1,30 @@ +# Occupation profile — biomedical scientist + +- **ESCO URI:** http://data.europa.eu/esco/occupation/2e8820ba-5b2d-4572-92a1-942dbd02a6d6 +- **ESCO code:** 2269.13 +- **ISCO-08 group:** 2269 — Health professionals not elsewhere classified +- **O*NET-SOC:** 29-1222.00 — Physicians, Pathologists (match: closeMatch) + +## Description (ESCO) + +Biomedical scientists perform all laboratory methods required as part of medical examination, monitoring, treatment, and research activities which involves designing, planning, organizing, applying, evaluating, interpreting and validating all analytical processes. They develop their activity in several fields of expertise such as haematology, microbiology, clinical immunology, cytopathology, histopathology, immunohistochemistry, and clinical biochemistry among others. This requires the application of qualitative and quantitative laboratory methods, including image analysis and digital pathology, to provide an investigative report and diagnostic opinion on products of a biological nature. + +## Definition + +nan + +## Alternative labels + +- biomedical doctor +- practitioner in biomedical science +- clinical embryologist +- blood bank technology specialist +- scientist in biomedicine +- analyst in biomedical science +- medical laboratory scientist +- clinical laboratory scientist +- biomedical analyst +- clinical laboratory technologist +- biomedical researcher +- researcher in biomedical science +- medical scientist diff --git a/references/skills.md b/references/skills.md new file mode 100644 index 0000000..aa008fe --- /dev/null +++ b/references/skills.md @@ -0,0 +1,173 @@ +# Competences — biomedical scientist + +Source: ESCO v1.2.1 occupation-skill relations (http://data.europa.eu/esco/occupation/2e8820ba-5b2d-4572-92a1-942dbd02a6d6). + +## Essential + +- **accept own accountability** (skill/competence) +- **adhere to organisational guidelines** (skill/competence) +- **advise on healthcare users' informed consent** (skill/competence) +- **analyse body fluids** (skill/competence) +- **analyse cell cultures** (skill/competence) +- **analytical methods in biomedical sciences** (knowledge) +- **apply context specific clinical competences** (skill/competence) +- **apply good clinical practices** (skill/competence) +- **apply organisational techniques** (skill/competence) +- **apply safety procedures in laboratory** (skill/competence) +- **apply scientific methods** (skill/competence) +- **assist in the production of laboratory documentation** (skill/competence) +- **automated analysers in the medical laboratory** (knowledge) +- **bioethics** (knowledge) +- **biological chemistry** (knowledge) +- **biological haematology** (knowledge) +- **biology** (knowledge) +- **biomedical science** (knowledge) +- **biomedical scientists' role in health care system** (knowledge) +- **biomedical techniques** (knowledge) +- **biophysics** (knowledge) +- **biosafety in biomedical laboratory** (knowledge) +- **biostatistics** (knowledge) +- **blood transfusion** (knowledge) +- **carry out biopsy** (skill/competence) +- **chemistry** (knowledge) +- **clinical biochemistry** (knowledge) +- **clinical cytology** (knowledge) +- **clinical immunology** (knowledge) +- **clinical microbiology** (knowledge) +- **communicate in healthcare** (skill/competence) +- **comply with legislation related to health care** (skill/competence) +- **comply with quality standards related to healthcare practice** (skill/competence) +- **conduct health related research** (skill/competence) +- **contribute to continuity of health care** (skill/competence) +- **cross-matching techniques for blood transfusions** (knowledge) +- **deal with emergency care situations** (skill/competence) +- **densiometry** (knowledge) +- **dermapathology** (knowledge) +- **develop a collaborative therapeutic relationship** (skill/competence) +- **diagnose disorders of the urogenital system** (skill/competence) +- **diagnostic methods in medical laboratory** (knowledge) +- **educate on the prevention of illness** (skill/competence) +- **embryology** (knowledge) +- **epidemiology** (knowledge) +- **follow clinical guidelines** (skill/competence) +- **health care legislation** (knowledge) +- **health care occupation-specific ethics** (knowledge) +- **histology** (knowledge) +- **histopathology** (knowledge) +- **human anatomy** (knowledge) +- **human physiology** (knowledge) +- **hygiene in a health care setting** (knowledge) +- **immunohaematology** (knowledge) +- **immunology** (knowledge) +- **implement quality control procedures for biomedical tests** (skill/competence) +- **inform policy makers on health-related challenges** (skill/competence) +- **interact with healthcare users** (skill/competence) +- **keep up to date with diagnostic innovations** (skill/competence) +- **label medical laboratory samples** (skill/competence) +- **laboratory methods in biomedical sciences** (knowledge) +- **listen actively** (skill/competence) +- **maintain medical laboratory equipment** (skill/competence) +- **manage healthcare staff** (knowledge) +- **manage healthcare users' data** (skill/competence) +- **manage infection control in the facility** (skill/competence) +- **medical genetics** (knowledge) +- **medical informatics** (knowledge) +- **medical terminology** (knowledge) +- **microbiology-bacteriology** (knowledge) +- **microscopic techniques** (knowledge) +- **molecular biology** (knowledge) +- **monitor the effects of medication** (skill/competence) +- **pathology** (knowledge) +- **perform cerebrospinal fluid analysis** (skill/competence) +- **perform pathology consultations** (skill/competence) +- **perform PCR covid test** (skill/competence) +- **perform reconstructive microsurgery** (skill/competence) +- **perform screening for infectious diseases** (skill/competence) +- **perform stem cell transplantation** (skill/competence) +- **perform toxicological studies** (skill/competence) +- **professional documentation in health care** (knowledge) +- **promote inclusion** (skill/competence) +- **provide health education** (skill/competence) +- **provide test results to medical staff** (skill/competence) +- **provide treatment strategies for challenges to human health** (skill/competence) +- **radiation protection** (knowledge) +- **record data from biomedical tests** (skill/competence) +- **respond to changing situations in health care** (skill/competence) +- **support blood transfusion services** (skill/competence) +- **techniques of blood-sampling** (knowledge) +- **tissue cytogenetics** (knowledge) +- **toxicology** (knowledge) +- **transplantation** (knowledge) +- **use e-health and mobile health technologies** (skill/competence) +- **validate biomedical analysis results** (skill/competence) +- **work in a multicultural environment in health care** (skill/competence) +- **work in multidisciplinary health teams** (skill/competence) + +## Optional + +- apply numeracy skills (skill/competence) +- carry out flow cytometry (skill/competence) +- collect biological samples from patients (skill/competence) +- conduct routine blood testing (skill/competence) +- conduct training on biomedical equipment (skill/competence) +- create solutions to problems (skill/competence) +- cryopreservation (knowledge) +- electroencephalography (knowledge) +- empathise with the healthcare user (skill/competence) +- ensure safety of healthcare users (skill/competence) +- examine samples in dermatology (skill/competence) +- explain the molecular basis of a disease to patients (skill/competence) +- first aid (knowledge) +- have computer literacy (skill/competence) +- hepatology (knowledge) +- interpret electromyograms (skill/competence) +- intracranial hypertension (knowledge) +- medical device vigilance reporting systems (knowledge) +- medical parasitology (knowledge) +- monitor biomedical equipment stock (skill/competence) +- multidisciplinary research (knowledge) +- neoplasia (knowledge) +- pedagogy (knowledge) +- perform diagnostic testing for allergies (skill/competence) +- perform virological test (skill/competence) +- proteomics (knowledge) +- research new treatments for blood related disorders (skill/competence) +- use foreign languages for health-related research (skill/competence) +- use foreign languages in patient care (skill/competence) + + + +## Market evidence (job-ad analysis, 33 ads, as of 2026-07-09) + +Share of analyzed job ads mentioning the item (threshold ≥ 20 %). Source: JSearch/Adzuna APIs. + +### Hard skills + +- data analysis — **55 %** +- experimental design — **52 %** +- human pathology — **48 %** +- cohort development — **48 %** +- pathology annotation — **48 %** +- regulatory compliance — **42 %** +- project management — **39 %** +- tissue processing — **21 %** +- microtomy — **21 %** + +### Methods + +- standard operating procedures — **52 %** +- biospecimen handling — **39 %** +- microscopy — **39 %** +- image analytics — **39 %** +- histology — **39 %** + +### Responsibilities + +- research project supervision — **48 %** +- report generation — **42 %** +- pathology annotation — **42 %** +- laboratory operations — **39 %** +- customer support — **39 %** +- data integrity maintenance — **39 %** + + diff --git a/references/tasks.md b/references/tasks.md new file mode 100644 index 0000000..0b9479d --- /dev/null +++ b/references/tasks.md @@ -0,0 +1,47 @@ +# Tasks & work activities — biomedical scientist + +Source: O*NET 30.3, occupation 29-1222.00 (Physicians, Pathologists). + +## Task statements + +- **[Core]** Review cases by analyzing autopsies, laboratory findings, or case investigation reports. +- **[Core]** Manage medical laboratories. +- **[Core]** Read current literature, talk with colleagues, or participate in professional organizations or conferences to keep abreast of developments in pathology. +- **[Core]** Develop or adopt new tests or instruments to improve diagnosis of diseases. +- **[Core]** Educate physicians, students, and other personnel in medical laboratory professions, such as medical technology, cytotechnology, or histotechnology. +- **[Core]** Perform autopsies to determine causes of deaths. +- **[Core]** Plan and supervise the work of the pathology staff, residents, or visiting pathologists. +- **[Core]** Identify the etiology, pathogenesis, morphological change, and clinical significance of diseases. +- **[Core]** Write pathology reports summarizing analyses, results, and conclusions. +- **[Core]** Analyze and interpret results from tests, such as microbial or parasite tests, urine analyses, hormonal assays, fine needle aspirations (FNAs), and polymerase chain reactions (PCRs). +- **[Core]** Communicate pathologic findings to surgeons or other physicians. +- **[Core]** Consult with physicians about ordering and interpreting tests or providing treatments. +- **[Core]** Examine microscopic samples to identify diseases or other abnormalities. +- **[Core]** Diagnose diseases or study medical conditions, using techniques such as gross pathology, histology, cytology, cytopathology, clinical chemistry, immunology, flow cytometry, or molecular biology. +- **[Supplemental]** Testify in depositions or trials as an expert witness. +- **[Supplemental]** Conduct research and present scientific findings. +- **[Supplemental]** Obtain specimens by performing procedures, such as biopsies or fine needle aspirations (FNAs) of superficial nodules. +- **[Supplemental]** Diagnose infections, such as Hepatitis B and Acquired Immune Deficiency Syndrome (AIDS), by conducting tests to detect the antibodies that patients' immune systems make to fight such infections. +- **[Supplemental]** Conduct genetic analyses of deoxyribonucleic acid (DNA) or chromosomes to diagnose small biopsies and cell samples. + +## Detailed work activities + +- Analyze laboratory specimens to detect abnormalities or other problems. +- Analyze medical data to determine cause of death. +- Analyze test data or images to inform diagnosis or treatment. +- Collaborate with healthcare professionals to plan or provide treatment. +- Collect biological specimens from patients. +- Communicate test or assessment results to medical professionals. +- Conduct research to increase knowledge about medical issues. +- Develop health assessment methods or programs. +- Diagnose medical conditions. +- Maintain medical or professional knowledge. +- Manage healthcare operations. +- Operate laboratory equipment to analyze medical samples. +- Prepare reports summarizing patient diagnostic or care activities. +- Present medical research reports. +- Research microbiological or chemical processes or structures. +- Supervise technical medical personnel. +- Test biological specimens to gather information about patient conditions. +- Testify at legal or legislative proceedings. +- Train medical providers. diff --git a/references/tools.md b/references/tools.md new file mode 100644 index 0000000..b7f19ed --- /dev/null +++ b/references/tools.md @@ -0,0 +1,123 @@ +# Tools & technology — biomedical scientist + +Source: O*NET 30.3 'Software Skills' for 29-1222.00. + +| Software | Category | Hot technology | +|---|---|---| +| Microsoft Access | Data base user interface and query software | yes | +| SAP software | Enterprise resource planning ERP software | yes | +| Microsoft Office software | Office suite software | yes | +| Microsoft PowerPoint | Presentation software | yes | +| Microsoft Excel | Spreadsheet software | yes | +| Accounts receivables system software | Accounting software | | +| Cerner Millennium ProFit | Accounting software | | +| Computer Service and Support AR 2000 Laboratory Billing System | Accounting software | | +| Healthvision MediAR | Accounting software | | +| HEX Laboratory Systems Billing and Cash Management | Accounting software | | +| McKesson Horizon Lab Financials | Accounting software | | +| SCC Soft Computer SoftA/R | Accounting software | | +| Seacoast Laboratory Data Systems SurroundLab AR | Accounting software | | +| Sunquest Information Systems Sunquest Clinical Financials | Accounting software | | +| XIFIN | Accounting software | | +| Cortex Medical Management Systems Cortex Medical Billing | Billing and invoicing software | | +| TELCOR Billing Information System | Billing and invoicing software | | +| Database management software | Data base management system software | | +| Database software | Data base user interface and query software | | +| ComBase | Information retrieval or search software | | +| Digital image databases | Information retrieval or search software | | +| Anatomic pathology software | Medical software | | +| Antek HealthWare LabDAQ | Medical software | | +| Aspyra CyberLAB | Medical software | | +| Aspyra CyberPATH | Medical software | | +| Blood Bank Computer Systems Blood Bank Control System | Medical software | | +| Blood bank information systems | Medical software | | +| Cerner CoPathPlus | Medical software | | +| Cerner Millennium PathNet | Medical software | | +| Cerner Millennium PathNet Blood Bank Transfusion | Medical software | | +| Clinical Information Systems CISLab CPS | Medical software | | +| Clinical Software Solutions CLIN1 Suite | Medical software | | +| ClinLab LIS | Medical software | | +| Comp Pro Med Polytech | Medical software | | +| Computer Trust WinSurge | Medical software | | +| Cortex Medical Management Systems The Gold Standard | Medical software | | +| CPSI CPSI System | Medical software | | +| CSS CLS-2000 | Medical software | | +| Custom Software Systems StarLab | Medical software | | +| EasyPath Software Pathology Assistant | Medical software | | +| Elekta Impac Software IntelliLab | Medical software | | +| Elekta Impac Software PowerPath | Medical software | | +| EpicLab Laboratory Information System | Medical software | | +| eTeleNext AP Anywhere | Medical software | | +| eTeleNext LIS | Medical software | | +| Fletcher-Flora Health Care Systems FFlex eSuite LIS | Medical software | | +| Fletcher-Flora Health Care Systems LabPak LIS | Medical software | | +| GE Healthcare Centricity Laboratory | Medical software | | +| GE Healthcare Centricity Laboratory Anatomic Pathology/Cytology | Medical software | | +| GE Healthcare Centricity Laboratory Transfusion Medicine | Medical software | | +| Haemonetics Symphony Suite | Medical software | | +| Healthvision TDSynergy Anatomic Pathology | Medical software | | +| Healthvision TDSynergy LIS | Medical software | | +| HEX Laboratory Systems LAB/HEX | Medical software | | +| HT Systems PatientSecure | Medical software | | +| Iatric Systems MobiLab | Medical software | | +| Korchek Technologies CareChek | Medical software | | +| Laboratory information system LIS | Medical software | | +| LabSoft LabNet | Medical software | | +| Lattice MediCopia | Medical software | | +| McKesson Horizon Anatomic Pathology | Medical software | | +| McKesson Horizon Blood Bank | Medical software | | +| McKesson Horizon Lab | Medical software | | +| McKesson Horizon MobileCare Phlebotomy | Medical software | | +| MEDITECH Anatomical Pathology | Medical software | | +| MEDITECH HCIS | Medical software | | +| Mediware Information Systems HCLL Donor | Medical software | | +| Mediware Information Systems HCLL Transfusion | Medical software | | +| Mediware Information Systems LifeTrak | Medical software | | +| Multidata Computer Systems MultiTech | Medical software | | +| NeTLIMS AutoAP | Medical software | | +| NeTLIMS AutoFusion | Medical software | | +| NeTLIMS AutoLIMS Core Lab | Medical software | | +| NetSoft IntelliPath | Medical software | | +| Niceware International LabelClinic CT | Medical software | | +| Novovision NovoPath | Medical software | | +| Omnitech OMNILAB | Medical software | | +| Orchard Software Orchard Harvest LIS | Medical software | | +| Orchard Software Orchard Pathology | Medical software | | +| PathLogix | Medical software | | +| PathView Systems Progeny | Medical software | | +| Psyche Systems LabWeb | Medical software | | +| Psyche Systems Systematic Blood Bank | Medical software | | +| Psyche Systems WindoPath | Medical software | | +| Quality Software Systems LabHealth | Medical software | | +| SCC Soft Computer SoftBank | Medical software | | +| SCC Soft Computer SoftDonor | Medical software | | +| SCC Soft Computer SoftLab | Medical software | | +| SCC Soft Computer SoftPath | Medical software | | +| Schuyler House SchuyLab | Medical software | | +| Seacoast Laboratory Data Systems SurroundLab Plus | Medical software | | +| Siemens NOVIUS Lab | Medical software | | +| Siemens Patient Identification Check | Medical software | | +| Small Business Computers of New England AP Easy | Medical software | | +| STARLIMS | Medical software | | +| Sunquest Information Systems Sunquest Collection Manager | Medical software | | +| Sunquest Information Systems Sunquest CoPathPlus | Medical software | | +| Sunquest Information Systems Sunquest Laboratory | Medical software | | +| Sunquest Information Systems Sunquest Transfusion Manager | Medical software | | +| WebPathLab | Medical software | | +| Wyndgate Technologies ElDorado Donor | Medical software | | +| Wyndgate Technologies SafeTrace | Medical software | | + + + +## Market evidence (job-ad analysis, 33 ads, as of 2026-07-09) + +Share of analyzed job ads mentioning the item (threshold ≥ 20 %). Source: JSearch/Adzuna APIs. + +### Tools + +- Microsoft Excel — **48 %** +- Microsoft PowerPoint — **48 %** +- Microsoft Word — **48 %** +- digital pathology program — **39 %** + +