From ff28bc5fbc951d8ff88c61d5e859d2592125f711 Mon Sep 17 00:00:00 2001 From: skillfactor-pipeline Date: Fri, 14 Aug 2026 16:46:29 +0200 Subject: [PATCH] feat: microbiologist skill package v0.1.0 --- PROVENANCE.md | 31 +++++ SKILL.md | 74 +++++++++++ manifest.json | 202 +++++++++++++++++++++++++++++ references/ai-skills.md | 274 ++++++++++++++++++++++++++++++++++++++++ references/market.md | 149 ++++++++++++++++++++++ references/profile.md | 36 ++++++ references/skills.md | 108 ++++++++++++++++ references/tasks.md | 37 ++++++ references/tools.md | 50 ++++++++ 9 files changed, 961 insertions(+) create mode 100644 PROVENANCE.md create mode 100644 SKILL.md create mode 100644 manifest.json create mode 100644 references/ai-skills.md create mode 100644 references/market.md create mode 100644 references/profile.md create mode 100644 references/skills.md create mode 100644 references/tasks.md create mode 100644 references/tools.md diff --git a/PROVENANCE.md b/PROVENANCE.md new file mode 100644 index 0000000..df7a534 --- /dev/null +++ b/PROVENANCE.md @@ -0,0 +1,31 @@ +# Data provenance — microbiologist + +Where the content of this skill package comes from, counted by +content items (tasks, competences, tools, evidence entries, curated +knowledge). Rendered live by Gitea: + +```mermaid +%%{init: {'theme':'base','themeVariables':{'pie1':'#f9a825','pie2':'#1e88e5','pie3':'#ff355e','pie4':'#d97757','pie5':'#8e24aa','pieOuterStrokeWidth':'0px','pieSectionTextColor':'#fff'}}}%% +pie showData + title Content sources — microbiologist + "ESCO (occupation & competences)" : 86 + "O*NET (tasks & tools)" : 73 + "Job boards (market evidence)" : 96 + "Anthropic official Claude skills" : 5 + "External AI skill packs (mapped)" : 141 +``` + +| Source | Items | Share | Files | +|---|---|---|---| +| ESCO (occupation & competences) | 86 | 21.4 % | references/profile.md, references/skills.md | +| O*NET (tasks & tools) | 73 | 18.2 % | references/tasks.md, references/tools.md | +| Job boards (market evidence) | 96 | 23.9 % | references/market.md (full report) + "Market evidence" headline sections | +| Wikipedia & AI expert curation | 0 | 0.0 % | glossary, literature, usecases, intake, quality, evals/ | +| Anthropic official Claude skills | 5 | 1.2 % | references/ai-skills.md, section "anthropics/skills" (official Claude Code skills) | +| External AI skill packs (mapped) | 141 | 35.2 % | references/ai-skills.md (per-source attribution inside) | +| Stack Exchange practitioner Q&A (CC-BY-SA) | 0 | 0.0 % | references/practitioner-qa.md (per-entry attribution inside) | + +Licensing: O*NET (USDOL/ETA, CC BY 4.0) · ESCO (© European Union) · +job-ad evidence via official APIs (JSearch/Adzuna) · Wikipedia content +paraphrased with source URLs — never copied · external AI skills are +linked, not copied (Apache-2.0/MIT/source-available, see ai-skills.md). diff --git a/SKILL.md b/SKILL.md new file mode 100644 index 0000000..3507f75 --- /dev/null +++ b/SKILL.md @@ -0,0 +1,74 @@ +--- +name: microbiologist +description: "Occupational skill for the role 'microbiologist' (also: virologist, microbiology research analyst, histologist, bacteriologist, microbiology studies research analyst, microbiology researcher). Use when the user asks for typical microbiologist work such as: Isolate and maintain cultures of bacteria or other microorganisms in prescribed or developed media, controlling moisture, aeration, temperature, and nutrition.; Monitor and perform tests on water, food, and the environment to detect harmful microorganisms or to obtain information about sources of pollution, contamination, or infection.; Develop new products and procedures for sterilization, food and pharmaceutical supply preservation, or microbial contamination detection." +--- + +# Microbiologist + +Microbiologists study and research the life forms, characteristics, and processes of microscopic organisms. They study microorganisms such as bacteria, protozoa, fungi, etc. in order to diagnose and counteract the effects that these microorganisms might have in animals, in the environment, in the food industry, or in the health care industry. + +## Core workflow + +1. Isolate and maintain cultures of bacteria or other microorganisms in prescribed or developed media, controlling moisture, aeration, temperature, and nutrition. +2. Monitor and perform tests on water, food, and the environment to detect harmful microorganisms or to obtain information about sources of pollution, contamination, or infection. +3. Develop new products and procedures for sterilization, food and pharmaceutical supply preservation, or microbial contamination detection. +4. Examine physiological, morphological, and cultural characteristics, using microscope, to identify and classify microorganisms in human, water, and food specimens. +5. Provide laboratory services for health departments, community environmental health programs, and physicians needing information for diagnosis and treatment. +6. Observe action of microorganisms upon living tissues of plants, higher animals, and other microorganisms, and on dead organic matter. +7. Investigate the relationship between organisms and disease, including the control of epidemics and the effects of antibiotics on microorganisms. +8. Supervise biological technologists and technicians and other scientists. + +## How to use this skill + +- Read [references/profile.md](references/profile.md) for the occupation profile and scope. +- Consult [references/tasks.md](references/tasks.md) for the full task and activity inventory. +- Check [references/skills.md](references/skills.md) for essential vs. optional competences. +- Check [references/tools.md](references/tools.md) for the software commonly used in this role. +- See [references/ai-skills.md](references/ai-skills.md) — matched external AI agent skills (per-source attribution). + +## Key competences (essential) + +- apply for research funding +- apply research ethics and scientific integrity principles in research activities +- apply scientific methods +- biology +- biotechnology +- botany +- clinical cytology +- collect biological data +- collect samples for analysis +- communicate with a non-scientific audience +- conduct research across disciplines +- conduct research on fauna +- conduct research on flora +- conduct research on reproductive medicine +- cryopreservation + +## Hot technologies + +- Microsoft Access +- Microsoft Outlook +- SAP software +- Microsoft Office software +- Microsoft Windows +- Microsoft PowerPoint +- Microsoft Excel +- Microsoft Word + + + + +## Hot technologies + +Top tools from 54 gated job ads (see references/market.md, as of 2026-07-17): + +- Microsoft Excel — 17 % +- LIMS — 11 % +- Microsoft Word — 11 % +- Microsoft PowerPoint — 7 % +- SAP — 6 % + + + +--- +*Sources: ESCO v1.2.1 (http://data.europa.eu/esco/occupation/a7a74a05-3dd0-46c6-99af-92df8042520c), O*NET 30.3 (19-1022.00). See manifest.json for licensing/attribution.* diff --git a/manifest.json b/manifest.json new file mode 100644 index 0000000..6d7ba1c --- /dev/null +++ b/manifest.json @@ -0,0 +1,202 @@ +{ + "name": "microbiologist", + "title": "microbiologist", + "version": "0.1.0", + "layer": "core", + "language": "en", + "generated": "2026-07-07", + "ids": { + "esco_uri": "http://data.europa.eu/esco/occupation/a7a74a05-3dd0-46c6-99af-92df8042520c", + "esco_code": "2131.4.10", + "isco_group": "2131", + "onet_soc": "19-1022.00", + "crosswalk_match": "exactMatch" + }, + "sources": [ + { + "name": "ESCO", + "version": "1.2.1", + "url": "https://esco.ec.europa.eu/" + }, + { + "name": "O*NET", + "version": "30.3", + "url": "https://www.onetcenter.org/", + "license": "CC BY 4.0" + } + ], + "attribution": "This package includes information from the O*NET Database (v30.3) by the U.S. Department of Labor, Employment and Training Administration (USDOL/ETA), CC BY 4.0. skillfactor is not endorsed by USDOL/ETA. ESCO data (v1.2.1) (c) European Union, used per the ESCO download conditions: https://esco.ec.europa.eu/en/use-esco/download", + "counts": { + "tasks": 14, + "dwas": 14, + "skills_essential": 53, + "skills_optional": 32, + "software": 44 + }, + "enrichment_ai_skills": { + "generated": "2026-07-14", + "method": "deterministic mapping (ISCO prefix + title/competence keywords)", + "sources": { + "anthropics/skills": { + "repo": "https://github.com/anthropics/skills", + "commit": "f6656c1", + "license": "Apache-2.0; the document skills (docx/pdf/pptx/xlsx) are source-available \u2014 see the LICENSE.txt in the upstream skill folder", + "skills": 2 + }, + "davila7/claude-code-templates": { + "repo": "https://github.com/davila7/claude-code-templates", + "commit": "fa79251", + "license": "MIT", + "skills": 12 + }, + "foryourhealth111-pixel/Vibe-Skills": { + "repo": "https://github.com/foryourhealth111-pixel/Vibe-Skills", + "commit": "34429a8", + "license": "Apache-2.0", + "skills": 10 + }, + "K-Dense-AI/claude-scientific-skills": { + "repo": "https://github.com/K-Dense-AI/claude-scientific-skills", + "commit": "4d97e29", + "license": "MIT", + "skills": 12 + }, + "K-Dense-AI/scientific-agent-skills": { + "repo": "https://github.com/K-Dense-AI/scientific-agent-skills", + "commit": "4d97e29", + "license": "MIT", + "skills": 12 + }, + "fcakyon/claude-codex-settings": { + "repo": "https://github.com/fcakyon/claude-codex-settings", + "commit": "44b7c00", + "license": "Apache-2.0", + "skills": 1 + }, + "brycewang-stanford/Auto-Empirical-Research-Skills": { + "repo": "https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills", + "commit": "85bf545", + "license": "CC-BY-4.0", + "skills": 12 + }, + "OpenRaiser/NanoResearch": { + "repo": "https://github.com/OpenRaiser/NanoResearch", + "commit": "7144364", + "license": "MIT", + "skills": 1 + }, + "Orchestra-Research/AI-research-SKILLs": { + "repo": "https://github.com/Orchestra-Research/AI-research-SKILLs", + "commit": "773a529", + "license": "MIT", + "skills": 1 + }, + "zechenzhangAGI/AI-research-SKILLs": { + "repo": "https://github.com/zechenzhangAGI/AI-research-SKILLs", + "commit": "773a529", + "license": "MIT", + "skills": 1 + }, + "bitwize-music-studio/claude-ai-music-skills": { + "repo": "https://github.com/bitwize-music-studio/claude-ai-music-skills", + "commit": "96446de", + "license": "custom (see upstream LICENSE)", + "skills": 1 + }, + "sanjay3290/ai-skills": { + "repo": "https://github.com/sanjay3290/ai-skills", + "commit": "3619692", + "license": "Apache-2.0", + "skills": 1 + }, + "claude-world/director-mode-lite": { + "repo": "https://github.com/claude-world/director-mode-lite", + "commit": "9d0c333", + "license": "MIT", + "skills": 1 + }, + "zebbern/claude-code-guide": { + "repo": "https://github.com/zebbern/claude-code-guide", + "commit": "d2c5280", + "license": "MIT", + "skills": 1 + }, + "staruhub/ClaudeSkills": { + "repo": "https://github.com/staruhub/ClaudeSkills", + "commit": "3d4045d", + "license": "MIT", + "skills": 1 + }, + "makenotion/claude-code-notion-plugin": { + "repo": "https://github.com/makenotion/claude-code-notion-plugin", + "commit": "9847f2a", + "license": "no explicit license \u2014 referenced by link only", + "skills": 1 + }, + "open-gitagent/opengap": { + "repo": "https://github.com/open-gitagent/opengap", + "commit": "d7a8e2e", + "license": "MIT", + "skills": 1 + }, + "wanshuiyin/Auto-claude-code-research-in-sleep": { + "repo": "https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep", + "commit": "eb5c9d7", + "license": "MIT", + "skills": 3 + }, + "nexu-io/open-design": { + "repo": "https://github.com/nexu-io/open-design", + "commit": "4b66023", + "license": "Apache-2.0", + "skills": 2 + }, + "ferdinandobons/startup-skill": { + "repo": "https://github.com/ferdinandobons/startup-skill", + "commit": "a5f97c3", + "license": "MIT", + "skills": 1 + }, + "a5c-ai/babysitter": { + "repo": "https://github.com/a5c-ai/babysitter", + "commit": "44a5d58b", + "license": "MIT", + "skills": 2 + }, + "mohitagw15856/pm-claude-skills": { + "repo": "https://github.com/mohitagw15856/pm-claude-skills", + "commit": "876fa30", + "license": "MIT", + "skills": 1 + } + }, + "total_skills": 80, + "tiers": { + "core": 78, + "adjacent": 2 + } + }, + "provenance": { + "items": { + "esco": 86, + "onet": 73, + "jobads": 96, + "wiki_ai": 0, + "anthropic": 5, + "ai_skills": 141, + "stackx": 0 + }, + "share_percent": { + "esco": 21.4, + "onet": 18.2, + "jobads": 23.9, + "wiki_ai": 0.0, + "anthropic": 1.2, + "ai_skills": 35.2, + "stackx": 0.0 + }, + "method": "content items per source category" + }, + "collar": "white", + "computer_work": true +} \ No newline at end of file diff --git a/references/ai-skills.md b/references/ai-skills.md new file mode 100644 index 0000000..340ed1b --- /dev/null +++ b/references/ai-skills.md @@ -0,0 +1,274 @@ +# External AI agent skills — microbiologist + +Proven, publicly available AI agent skills mapped to this occupation. +Nothing is copied from the sources: every entry is a name, a one-line +summary and a link to the upstream skill package. Each section names +its source repository, commit, license and retrieval date. + +**Tiers:** `core` = the skill directly exercises a top market hard +skill, tool or method (from gated job-ad evidence) or an essential +ESCO competence of this occupation; `adjacent` = +plausibly useful, secondary. Entries are capped at 12 per source +and 80 in total per occupation (core first, +strongest matches survive); everything beyond the caps is excluded +and logged in the pipeline audit trail, not in this package. + +_Matched deterministically (ISCO group + title/competence keywords, +tiered against market evidence + ESCO essentials) by +`pipeline/p5_enrich_ai_skills.py` on 2026-07-14._ + +## Source: anthropics/skills + +- Repository: [https://github.com/anthropics/skills](https://github.com/anthropics/skills) (commit `f6656c1`, retrieved 2026-07-14) +- License: Apache-2.0; the document skills (docx/pdf/pptx/xlsx) are source-available — see the LICENSE.txt in the upstream skill folder + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `docx` | adjacent | Use this skill whenever the user wants to create, read, edit, or manipulate Word documents (.docx files) or Word templates (.dotx files). Triggers include: any mention of 'Word doc', 'word document', '.docx', '.dotx', or requests to … | [source](https://github.com/anthropics/skills/tree/main/skills/docx) | +| `pdf` | adjacent | Use this skill whenever the user wants to do anything with PDF files. This includes reading or extracting text/tables from PDFs, combining or merging multiple PDFs into one, splitting PDFs apart, rotating pages, adding watermarks, creating … | [source](https://github.com/anthropics/skills/tree/main/skills/pdf) | + +## Source: a5c-ai/babysitter + +- Repository: [https://github.com/a5c-ai/babysitter](https://github.com/a5c-ai/babysitter) (commit `44a5d58b`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `elicit-research-assistant` | core | AI-assisted literature review for question-answering over papers and evidence synthesis | [source](https://github.com/a5c-ai/babysitter/tree/44a5d58b/library/specializations/domains/science/scientific-discovery/skills/elicit-research-assistant) | +| `meta-analysis-engine` | core | Skill for conducting meta-analyses of research findings | [source](https://github.com/a5c-ai/babysitter/tree/44a5d58b/library/specializations/domains/science/scientific-discovery/skills/meta-analysis-engine) | + +## Source: bitwize-music-studio/claude-ai-music-skills + +- Repository: [https://github.com/bitwize-music-studio/claude-ai-music-skills](https://github.com/bitwize-music-studio/claude-ai-music-skills) (commit `96446de`, retrieved 2026-07-14) +- License: custom (see upstream LICENSE) + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `researchers-verifier` | core | Performs quality control, citation validation, and fact-checking before human review. Use after research is complete to verify all sources and claims before production. | [source](https://github.com/bitwize-music-studio/claude-ai-music-skills/tree/96446de/skills/researchers-verifier) | + +## Source: brycewang-stanford/Auto-Empirical-Research-Skills + +- Repository: [https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills) (commit `85bf545`, retrieved 2026-07-14) +- License: CC-BY-4.0 + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `methodology-skills` | core | 13 research methodology skills. Trigger: study design, methodology selection, scientific reasoning, mentoring. Design: rigorous methods frameworks covering qualitative, quantitative, and mixed approaches. | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/research/methodology) | +| `academic-baseline` | core | Use when working on any empirical academic research context — paper writing, data analysis, literature review, or any task involving citations, results, or publication artifacts. Establishes non-negotiable principles that govern all other … | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/60-regisely-superpapers/skills/academic-baseline) | +| `claude-scientific-guide` | core | Ready-to-use agent skills for scientific research and engineering | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/research/methodology/claude-scientific-guide) | +| `research-ideation` | core | This skill should be used when the user asks to "brainstorm research ideas", "use 5W1H framework", "identify research gaps", "conduct gap analysis", "start research project", "conduct literature review", "define research question", "select … | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/33-Galaxy-Dawn-claude-scholar/skills/research-ideation) | +| `hud` | core | Diverga HUD (Heads-Up Display) management skill. Configure and manage the research project statusline display. Supports multiple presets: research, checkpoint, memory, minimal. Triggers: "hud", "statusline", "display settings | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/25-HosungYou-Diverga/skills/hud) | +| `econ-audit` | core | Audit economic analysis outputs (fiscal briefings, macro briefings, market research, longlists, and other quantitative economic documents) against methodology standards, academic literature, and common errors. Runs structured checks across … | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/58-charlescoverdale-econstack/econ-audit) | +| `literature-review` | core | Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research … | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/03-K-Dense-AI-claude-scientific-skills/literature-review) | +| `data-scientist` | core | Data science methodology for Python research: EDA, validation, causal inference (IV, DiD, RD, synthetic control), clustering/PCA/UMAP, supervised ML, geospatial, visualization. Method selection guidance. For syntax, load tool-specific … | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/17-DAAF-Contribution-Community-daaf/dot-claude/skills/data-scientist) | +| `peer-review-guide` | core | Conduct thorough, constructive peer reviews and evaluate research papers | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/research/paper-review/peer-review-guide) | +| `law-skills` | core | 9 legal research skills. Trigger: legal research, case law analysis, regulatory compliance. Design: legal databases, citation networks, and judicial analytics tools. | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/domains/law) | +| `new-project` | core | Full research pipeline from idea to paper. Orchestrates all phases — discovery, strategy, analysis, writing, peer review, and submission. Use when starting a new research project from scratch. | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/16-hsantanna88-clo-author/dot-claude/skills/new-project) | +| `psychology-research-guide` | core | Psychological research methods, experimental design, and analysis | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/domains/social-science/psychology-research-guide) | + +## Source: claude-world/director-mode-lite + +- Repository: [https://github.com/claude-world/director-mode-lite](https://github.com/claude-world/director-mode-lite) (commit `9d0c333`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `handoff-gemini` | core | Delegate long-context analysis, research, and large-document summarization to Google Gemini CLI (1M-token context) via non-interactive `gemini -p`, preserving Claude context. Use when the user says 'use gemini'/'hand off to gemini' or a … | [source](https://github.com/claude-world/director-mode-lite/tree/9d0c333/skills/handoff-gemini) | + +## Source: davila7/claude-code-templates + +- Repository: [https://github.com/davila7/claude-code-templates](https://github.com/davila7/claude-code-templates) (commit `fa79251`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `scientific-critical-thinking` | core | Evaluate research rigor. Assess methodology, experimental design, statistical validity, biases, confounding, evidence quality (GRADE, Cochrane ROB), for critical analysis of scientific claims. | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/scientific-critical-thinking) | +| `denario` | core | Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/denario) | +| `latex-posters` | core | Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/latex-posters) | +| `market-research-reports` | core | Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics and generate-image, … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/market-research-reports) | +| `research-engineer` | core | An uncompromising Academic Research Engineer. Operates with absolute scientific rigor, objective criticism, and zero flair. Focuses on theoretical correctness, formal verification, and optimal implementation across any required technology. | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/ai-research/research-engineer) | +| `venue-templates` | core | Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publication venues (Nature, Science, PLOS, IEEE, ACM), academic conferences (NeurIPS, ICML, CVPR, CHI), research posters, and … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/venue-templates) | +| `scientific-brainstorming` | core | Research ideation partner. Generate hypotheses, explore interdisciplinary connections, challenge assumptions, develop methodologies, identify research gaps, for creative scientific problem-solving. | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/scientific-brainstorming) | +| `scientific-slides` | core | Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/scientific-slides) | +| `scientific-writing` | core | Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process: (1) create section outlines with key points using research-lookup, (2) convert to flowing … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/scientific-writing) | +| `biomni` | core | Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/biomni) | +| `literature-review` | core | Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/literature-review) | +| `citation-management` | core | Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/citation-management) | + +## Source: fcakyon/claude-codex-settings + +- Repository: [https://github.com/fcakyon/claude-codex-settings](https://github.com/fcakyon/claude-codex-settings) (commit `44b7c00`, retrieved 2026-07-14) +- License: Apache-2.0 + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `paper-search-usage` | core | This skill should be used when user asks to "search for papers", "find research papers", "search arXiv", "search PubMed", "find academic papers", "search IEEE", "search Scopus", or "look up scientific literature". | [source](https://github.com/fcakyon/claude-codex-settings/tree/44b7c00/plugins/paper-search-tools/skills/paper-search-usage) | + +## Source: ferdinandobons/startup-skill + +- Repository: [https://github.com/ferdinandobons/startup-skill](https://github.com/ferdinandobons/startup-skill) (commit `a5f97c3`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `startup-design` | core | Design, validate, and plan a startup from scratch. Covers market research, competitive analysis, business model, brand identity, product definition, financial projections, and validation experiments. Trigger when the user has a startup … | [source](https://github.com/ferdinandobons/startup-skill/tree/a5f97c3/startup-design) | + +## Source: foryourhealth111-pixel/Vibe-Skills + +- Repository: [https://github.com/foryourhealth111-pixel/Vibe-Skills](https://github.com/foryourhealth111-pixel/Vibe-Skills) (commit `34429a8`, retrieved 2026-07-14) +- License: Apache-2.0 + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `denario` | core | Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/denario) | +| `scientific-brainstorming` | core | Open-ended scientific ideation partner. Use for research gaps, mechanism exploration, interdisciplinary connections, assumptions, possible research directions, and lightweight literature matrix or A+B paper-combination idea mapping. For … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/scientific-brainstorming) | +| `scientific-reporting` | core | Write research/technical reports with strong structure + figure standards. Supports Markdown/HTML/PDF outputs (Quarto optional), executive summary, methods, results, discussion, and reproducibility appendix. | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/scientific-reporting) | +| `slides-as-code` | core | Build research slides with text-first source (Slidev/Marp/Reveal/Quarto) and reproducible export (PDF). Includes structure, figure reuse rules, and quality checklist for top-tier scientific presentations. | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/slides-as-code) | +| `scientific-slides` | core | Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/scientific-slides) | +| `literature-review` | core | Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/literature-review) | +| `openalex-database` | core | Query and analyze scholarly literature using the OpenAlex database. This skill should be used when searching for academic papers, analyzing research trends, finding works by authors or institutions, tracking citations, discovering open … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/openalex-database) | +| `scholar-evaluation` | core | Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across research quality dimensions including problem formulation, methodology, analysis, and writing with quantitative scoring and … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/scholar-evaluation) | +| `citation-management` | core | Comprehensive citation management for academic research. Resolve bibliographic identifiers, extract accurate metadata, validate citations, deduplicate references, and generate properly formatted BibTeX entries. This skill should be used … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/citation-management) | +| `statistical-analysis` | core | Statistical analysis toolkit. Hypothesis tests (t-test, ANOVA, chi-square), regression, correlation, Bayesian stats, power analysis, assumption checks, APA reporting, for academic research. | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/statistical-analysis) | + +## Source: K-Dense-AI/claude-scientific-skills + +- Repository: [https://github.com/K-Dense-AI/claude-scientific-skills](https://github.com/K-Dense-AI/claude-scientific-skills) (commit `4d97e29`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `latex-posters` | core | Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/latex-posters) | +| `research-lookup` | core | Look up current research and scientific information across three backends: fast web search via parallel-cli (default), the Parallel Chat API for deep multi-source synthesis, and Perplexity sonar-pro-search for scholarly paper searches. … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/research-lookup) | +| `market-research-reports` | core | Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics and generate-image, … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/market-research-reports) | +| `scientific-brainstorming` | core | Creative research ideation and exploration. Use for open-ended brainstorming sessions, exploring interdisciplinary connections, challenging assumptions, or identifying research gaps. Best for early-stage research planning when you do not … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/scientific-brainstorming) | +| `venue-templates` | core | Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publication venues (Nature, Science, PLOS, IEEE, ACM), academic conferences (NeurIPS, ICML, CVPR, CHI), research posters, and … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/venue-templates) | +| `autoskill` | core | Observe the user's screen via screenpipe, detect repeated research workflows, match them against existing scientific-agent-skills, and draft new skills (or composition recipes that chain existing ones) for the patterns not yet covered. Use … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/autoskill) | +| `exa-search` | core | Web toolkit powered by Exa, tuned for scientific and technical content. Use this skill when the user needs to search the web or fetch/extract URL content. Covers: web search (semantic lookups, research, current info — with optional … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/exa-search) | +| `scientific-slides` | core | Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/scientific-slides) | +| `scientific-writing` | core | Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with (1) section outlines with key points using research-lookup then (2) convert to flowing … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/scientific-writing) | +| `literature-review` | core | Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/literature-review) | +| `citation-management` | core | Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/citation-management) | +| `scholar-evaluation` | core | Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across research quality dimensions including problem formulation, methodology, analysis, and writing with quantitative scoring and … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/scholar-evaluation) | + +## Source: K-Dense-AI/scientific-agent-skills + +- Repository: [https://github.com/K-Dense-AI/scientific-agent-skills](https://github.com/K-Dense-AI/scientific-agent-skills) (commit `4d97e29`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `latex-posters` | core | Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/latex-posters) | +| `research-lookup` | core | Look up current research and scientific information across three backends: fast web search via parallel-cli (default), the Parallel Chat API for deep multi-source synthesis, and Perplexity sonar-pro-search for scholarly paper searches. … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/research-lookup) | +| `market-research-reports` | core | Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics and generate-image, … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/market-research-reports) | +| `scientific-brainstorming` | core | Creative research ideation and exploration. Use for open-ended brainstorming sessions, exploring interdisciplinary connections, challenging assumptions, or identifying research gaps. Best for early-stage research planning when you do not … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/scientific-brainstorming) | +| `venue-templates` | core | Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publication venues (Nature, Science, PLOS, IEEE, ACM), academic conferences (NeurIPS, ICML, CVPR, CHI), research posters, and … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/venue-templates) | +| `autoskill` | core | Observe the user's screen via screenpipe, detect repeated research workflows, match them against existing scientific-agent-skills, and draft new skills (or composition recipes that chain existing ones) for the patterns not yet covered. Use … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/autoskill) | +| `exa-search` | core | Web toolkit powered by Exa, tuned for scientific and technical content. Use this skill when the user needs to search the web or fetch/extract URL content. Covers: web search (semantic lookups, research, current info — with optional … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/exa-search) | +| `scientific-slides` | core | Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/scientific-slides) | +| `scientific-writing` | core | Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with (1) section outlines with key points using research-lookup then (2) convert to flowing … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/scientific-writing) | +| `literature-review` | core | Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/literature-review) | +| `citation-management` | core | Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/citation-management) | +| `scholar-evaluation` | core | Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across research quality dimensions including problem formulation, methodology, analysis, and writing with quantitative scoring and … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/scholar-evaluation) | + +## Source: makenotion/claude-code-notion-plugin + +- Repository: [https://github.com/makenotion/claude-code-notion-plugin](https://github.com/makenotion/claude-code-notion-plugin) (commit `9847f2a`, retrieved 2026-07-14) +- License: no explicit license — referenced by link only + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `notion-research-documentation` | core | Searches across your Notion workspace, synthesizes findings from multiple pages, and creates comprehensive research documentation saved as new Notion pages. Turns scattered information into structured reports with proper citations and … | [source](https://github.com/makenotion/claude-code-notion-plugin/tree/9847f2a/skills/notion/research-documentation) | + +## Source: mohitagw15856/pm-claude-skills + +- Repository: [https://github.com/mohitagw15856/pm-claude-skills](https://github.com/mohitagw15856/pm-claude-skills) (commit `876fa30`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `literature-review` | core | Structure and write a literature review for any research topic. Use when asked to write a literature review, systematic review summary, narrative review, or research background section. Produces a structured review with thematic … | [source](https://github.com/mohitagw15856/pm-claude-skills/tree/876fa30/plugins/pm-research/skills/literature-review) | + +## Source: nexu-io/open-design + +- Repository: [https://github.com/nexu-io/open-design](https://github.com/nexu-io/open-design) (commit `4b66023`, retrieved 2026-07-14) +- License: Apache-2.0 + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `html-ppt-zhangzara-monochrome` | core | A grant proposal on CRISPR base-editing for sickle-cell disease — the hypothesis, the approach, the milestones, and the risk. Built as a decision-grade academic research deck for grant review committee. | [source](https://github.com/nexu-io/open-design/tree/4b66023/design-templates/html-ppt-zhangzara-monochrome) | +| `kami-deck` | core | A lab-meeting deck on gut-microbiome links to sleep quality — the design, the results, the caveats, and the next experiment. Built as a decision-grade academic research deck for lab group, PI. | [source](https://github.com/nexu-io/open-design/tree/4b66023/design-templates/kami-deck) | + +## Source: open-gitagent/opengap + +- Repository: [https://github.com/open-gitagent/opengap](https://github.com/open-gitagent/opengap) (commit `d7a8e2e`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `research` | core | Researches a topic by breaking it into subtopics, gathering factual information with reasoning, and producing a structured summary with key findings and open questions. Use when the user asks to research, investigate, look up, summarize a … | [source](https://github.com/open-gitagent/opengap/tree/d7a8e2e/examples/lyzr-agent/skills/research) | + +## Source: OpenRaiser/NanoResearch + +- Repository: [https://github.com/OpenRaiser/NanoResearch](https://github.com/OpenRaiser/NanoResearch) (commit `7144364`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `academic-plotting` | core | Generates publication-quality figures for ML papers from research context. Given a paper section or description, extracts system components and relationships to generate architecture diagrams via Gemini. Given experiment results or data, … | [source](https://github.com/OpenRaiser/NanoResearch/tree/7144364/skills/vendor-ai-research/academic-plotting) | + +## Source: Orchestra-Research/AI-research-SKILLs + +- Repository: [https://github.com/Orchestra-Research/AI-research-SKILLs](https://github.com/Orchestra-Research/AI-research-SKILLs) (commit `773a529`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `academic-plotting` | core | Generates publication-quality figures for ML papers from research context. Given a paper section or description, extracts system components and relationships to generate architecture diagrams via Gemini. Given experiment results or data, … | [source](https://github.com/Orchestra-Research/AI-research-SKILLs/tree/773a529/20-ml-paper-writing/academic-plotting) | + +## Source: sanjay3290/ai-skills + +- Repository: [https://github.com/sanjay3290/ai-skills](https://github.com/sanjay3290/ai-skills) (commit `3619692`, retrieved 2026-07-14) +- License: Apache-2.0 + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `deep-research` | core | Execute autonomous multi-step research using Google Gemini Deep Research Agent. Use for: market analysis, competitive landscaping, literature reviews, technical research, due diligence. Takes 2-10 minutes but produces detailed, cited … | [source](https://github.com/sanjay3290/ai-skills/tree/3619692/skills/deep-research) | + +## Source: staruhub/ClaudeSkills + +- Repository: [https://github.com/staruhub/ClaudeSkills](https://github.com/staruhub/ClaudeSkills) (commit `3d4045d`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `deep-research` | core | Use this skill when the user wants an evidence-based research memo, literature review, market/policy/technical landscape, or a multi-source decision brief with citations, trade-offs, and a clear conclusion. Best for tasks that need … | [source](https://github.com/staruhub/ClaudeSkills/tree/3d4045d/skills/Geek-skills-deep-research) | + +## Source: wanshuiyin/Auto-claude-code-research-in-sleep + +- Repository: [https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep](https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep) (commit `eb5c9d7`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `research-lit` | core | Search and analyze research papers, find related work, summarize key ideas. Use when user says "find papers", "related work", "literature review", "what does this paper say", or needs to understand academic papers. | [source](https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep/tree/eb5c9d7/skills/research-lit) | +| `research-review` | core | Get a deep critical review of research from GPT using a secondary Codex agent. Use when user says \"review my research\", \"help me review\", \"get external review\", or wants critical feedback on research ideas, papers, or experimental … | [source](https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep/tree/eb5c9d7/skills/skills-codex/research-review) | +| `research-wiki` | core | Persistent research knowledge base that accumulates papers, ideas, experiments, claims, and their relationships across the entire research lifecycle. Inspired by Karpathy's LLM Wiki pattern. Use when user says \"知识库\", \"research wiki\", … | [source](https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep/tree/eb5c9d7/skills/research-wiki) | + +## Source: zebbern/claude-code-guide + +- Repository: [https://github.com/zebbern/claude-code-guide](https://github.com/zebbern/claude-code-guide) (commit `d2c5280`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `vc-industry-research` | core | Generate professional primary market / venture capital industry research reports, including sector deep-dives, investment memos, and market analysis. Produces detailed PDF reports covering TMT, consumer, healthcare, and industrials. … | [source](https://github.com/zebbern/claude-code-guide/tree/d2c5280/skills/vc-industry-research) | + +## Source: zechenzhangAGI/AI-research-SKILLs + +- Repository: [https://github.com/zechenzhangAGI/AI-research-SKILLs](https://github.com/zechenzhangAGI/AI-research-SKILLs) (commit `773a529`, retrieved 2026-07-14) +- License: MIT + +| Skill | Tier | What it adds | Upstream | +|---|---|---|---| +| `academic-plotting` | core | Generates publication-quality figures for ML papers from research context. Given a paper section or description, extracts system components and relationships to generate architecture diagrams via Gemini. Given experiment results or data, … | [source](https://github.com/zechenzhangAGI/AI-research-SKILLs/tree/773a529/20-ml-paper-writing/academic-plotting) | diff --git a/references/market.md b/references/market.md new file mode 100644 index 0000000..0eee80d --- /dev/null +++ b/references/market.md @@ -0,0 +1,149 @@ +# Market evidence report — microbiologist + +Source: **54 real job ads** (JSearch API, countries: us 54), extracted into the MSSQL evidence store; as of 2026-07-17. +This report contains extracted, aggregated facts only — no ad text is +reproduced (copyright / platform terms). + +## Seniority distribution + +| Seniority | Ads | Share | +|---|---|---| +| mid | 31 | 57 % | +| junior | 8 | 15 % | +| senior | 8 | 15 % | +| lead | 4 | 7 % | +| n/a | 3 | 6 % | + +## Tools — full market ranking + +| # | Item | Ads | Share | +|---|---|---|---| +| 1 | Microsoft Excel | 9 | 17 % | +| 2 | LIMS | 6 | 11 % | +| 3 | Microsoft Word | 6 | 11 % | +| 4 | Microsoft PowerPoint | 4 | 7 % | +| 5 | SAP | 3 | 6 % | + +## Hard skills — full market ranking + +| # | Item | Ads | Share | +|---|---|---|---| +| 1 | data analysis | 15 | 28 % | +| 2 | microbiological testing | 15 | 28 % | +| 3 | environmental monitoring | 13 | 24 % | +| 4 | virology | 6 | 11 % | +| 5 | aseptic technique | 5 | 9 % | +| 6 | method validation | 5 | 9 % | +| 7 | aseptic techniques | 4 | 7 % | +| 8 | data documentation | 4 | 7 % | +| 9 | microbiology | 4 | 7 % | +| 10 | regulatory compliance | 4 | 7 % | +| 11 | bioburden analysis | 3 | 6 % | +| 12 | cell culture | 3 | 6 % | +| 13 | data review | 3 | 6 % | +| 14 | endotoxin testing | 3 | 6 % | +| 15 | laboratory operations management | 3 | 6 % | +| 16 | microbiology testing | 3 | 6 % | + +## Methods — full market ranking + +| # | Item | Ads | Share | +|---|---|---|---| +| 1 | cGMP | 6 | 11 % | +| 2 | GMP | 6 | 11 % | +| 3 | SOPs | 6 | 11 % | +| 4 | glp | 4 | 7 % | +| 5 | quality control processes | 3 | 6 % | + +## Responsibilities — full market ranking + +| # | Item | Ads | Share | +|---|---|---|---| +| 1 | equipment maintenance | 7 | 13 % | +| 2 | data analysis | 4 | 7 % | +| 3 | method development | 4 | 7 % | +| 4 | documentation | 3 | 6 % | +| 5 | environmental monitoring | 3 | 6 % | +| 6 | inventory management | 3 | 6 % | +| 7 | media preparation | 3 | 6 % | +| 8 | record maintenance | 3 | 6 % | +| 9 | sample collection | 3 | 6 % | +| 10 | sample testing | 3 | 6 % | +| 11 | stakeholder communication | 3 | 6 % | +| 12 | testing | 3 | 6 % | +| 13 | testing performance | 3 | 6 % | + +## Regional breakdown + +> **Corpus note:** 54 relevant ads in total — below the 100-ad target for a fully reliable ranking. Percentages above should be read as indicative. + +### US (us) + +54 ads. + +**Top hard skills:** + +- data analysis — 28 % (15 ads) +- microbiological testing — 28 % (15 ads) +- environmental monitoring — 24 % (13 ads) +- virology — 11 % (6 ads) +- aseptic technique — 9 % (5 ads) +- method validation — 9 % (5 ads) +- aseptic techniques — 7 % (4 ads) +- data documentation — 7 % (4 ads) +- microbiology — 7 % (4 ads) +- regulatory compliance — 7 % (4 ads) + +**Top tools:** + +- Microsoft Excel — 17 % (9 ads) +- LIMS — 11 % (6 ads) +- Microsoft Word — 11 % (6 ads) +- Microsoft PowerPoint — 7 % (4 ads) +- SAP — 6 % (3 ads) +- Office 365 — 4 % (2 ads) +- SharePoint — 4 % (2 ads) +- TrackWise — 4 % (2 ads) + +**Seniority:** mid 57 % · junior 15 % · senior 15 % · lead 7 % · n/a 6 % + +### UK (gb) + +**Insufficient evidence** — 0 ads (minimum for a regional ranking: 30). No ranking is reported for this region. + +### EU/DACH (de, at, ch, nl) + +**Insufficient evidence** — 0 ads (minimum for a regional ranking: 30). No ranking is reported for this region. + + +## Job title variants in the market + +| Title | Ads | +|---|---| +| Microbiologist | 6 | +| Associate Microbiologist | 2 | +| Senior Microbiologist | 2 | +| AI Safety Virologist: LLM Risk & Biosecurity | 1 | +| Associate Director, Patient Safety- Virology | 1 | +| Associate Scientist 1 - Microbiology | 1 | +| Associate Scientist, Microbiology | 1 | +| Director, Quality Microbiology | 1 | +| Entry Microbiologist: Decontamination & Mass Spec (Equity) | 1 | +| Field Virology & Infectious Disease Research Scientist | 1 | +| Field- Virology & Infectious Disease Scientist | 1 | +| Immunology / Virology Post-Doctoral Fellowship at USAMRIID | 1 | +| IN-IDOH-Microbiologist | 1 | +| Lead Medical Laboratory Scientist - Microbiology Lab at HUP, FT 2nd Shift | 1 | +| Microbiologist - Bioburden/Endotoxin | 1 | +| Microbiologist (Biosafety) | 1 | +| Microbiologist I | 1 | +| Microbiology Laboratory Technician - MD | 1 | +| Microbiology Specialist – GMP Biologics (I–III) | 1 | +| Microbiology Technologist PRN | 1 | +| Molecular Virologist: Zoonotic Pathogen Research | 1 | +| Molecular Virology Research Scientist | 1 | +| Principal Scientist, Clinical Microbiology and Virology | 1 | +| Principal Virologist, Responsible Development and Innovation, DeepMind | 1 | +| QC Microbiologist | 1 | + +Methodology: entities extracted per ad ({hard_skills, tools, methods, responsibilities, seniority}), normalized, counted as DISTINCT ads per entity; report threshold ≥ 3 ads. Headline sections in skills.md/tools.md use the stricter ≥ 20 % threshold. diff --git a/references/profile.md b/references/profile.md new file mode 100644 index 0000000..0cc2ce6 --- /dev/null +++ b/references/profile.md @@ -0,0 +1,36 @@ +# Occupation profile — microbiologist + +- **ESCO URI:** http://data.europa.eu/esco/occupation/a7a74a05-3dd0-46c6-99af-92df8042520c +- **ESCO code:** 2131.4.10 +- **ISCO-08 group:** 2131 — Biologists, botanists, zoologists and related professionals +- **O*NET-SOC:** 19-1022.00 — Microbiologists (match: exactMatch) + +## Description (ESCO) + +Microbiologists study and research the life forms, characteristics, and processes of microscopic organisms. They study microorganisms such as bacteria, protozoa, fungi, etc. in order to diagnose and counteract the effects that these microorganisms might have in animals, in the environment, in the food industry, or in the health care industry. + +## Definition + +nan + +## Alternative labels + +- virologist +- microbiology research analyst +- histologist +- bacteriologist +- microbiology studies research analyst +- microbiology researcher +- microbiology studies scientist +- microbiology science researcher +- microbiology scholar +- microbiology studies analyst +- helminthologist +- microbiology studies researcher +- microbiology biotechnologist +- microbiology studies scholar +- parasitologist +- microbiology scientist +- microbiology analyst +- microbiology studies research scientist +- microbiology research scientist diff --git a/references/skills.md b/references/skills.md new file mode 100644 index 0000000..521c37f --- /dev/null +++ b/references/skills.md @@ -0,0 +1,108 @@ +# Competences — microbiologist + +Source: ESCO v1.2.1 occupation-skill relations (http://data.europa.eu/esco/occupation/a7a74a05-3dd0-46c6-99af-92df8042520c). + +## Essential + +- **apply for research funding** (skill/competence) +- **apply research ethics and scientific integrity principles in research activities** (skill/competence) +- **apply scientific methods** (skill/competence) +- **biology** (knowledge) +- **biotechnology** (knowledge) +- **botany** (knowledge) +- **clinical cytology** (knowledge) +- **collect biological data** (skill/competence) +- **collect samples for analysis** (skill/competence) +- **communicate with a non-scientific audience** (skill/competence) +- **conduct research across disciplines** (skill/competence) +- **conduct research on fauna** (skill/competence) +- **conduct research on flora** (skill/competence) +- **conduct research on reproductive medicine** (skill/competence) +- **cryopreservation** (knowledge) +- **demonstrate disciplinary expertise** (skill/competence) +- **detect microorganisms** (skill/competence) +- **develop professional network with researchers and scientists** (skill/competence) +- **disseminate results to the scientific community** (skill/competence) +- **draft scientific or academic papers and technical documentation** (skill/competence) +- **evaluate research activities** (skill/competence) +- **gather experimental data** (skill/competence) +- **increase the impact of science on policy and society** (skill/competence) +- **integrate gender dimension in research** (skill/competence) +- **interact professionally in research and professional environments** (skill/competence) +- **life sciences** (knowledge) +- **manage findable accessible interoperable and reusable data** (skill/competence) +- **manage intellectual property rights** (skill/competence) +- **manage open publications** (skill/competence) +- **manage personal professional development** (skill/competence) +- **manage research data** (skill/competence) +- **medical genetics** (knowledge) +- **medical mycology** (knowledge) +- **mentor individuals** (skill/competence) +- **microbiology-bacteriology** (knowledge) +- **molecular biology** (knowledge) +- **operate open source software** (skill/competence) +- **pathogenic microorganisms** (knowledge) +- **perform project management** (skill/competence) +- **perform scientific research** (skill/competence) +- **promote open innovation in research** (skill/competence) +- **promote the participation of citizens in scientific and research activities** (skill/competence) +- **promote the transfer of knowledge** (skill/competence) +- **proteomics** (knowledge) +- **publish academic research** (skill/competence) +- **scientific literature** (knowledge) +- **scientific research methodology** (knowledge) +- **send samples to laboratory** (skill/competence) +- **speak different languages** (skill/competence) +- **synthesise information** (skill/competence) +- **think abstractly** (skill/competence) +- **virology** (knowledge) +- **write scientific publications** (skill/competence) + +## Optional + +- advise on legislative acts (skill/competence) +- analyse cell cultures (skill/competence) +- apply blended learning (skill/competence) +- assess environmental impact (skill/competence) +- assist in clinical trials (skill/competence) +- biological chemistry (knowledge) +- communicable diseases (knowledge) +- contribute to registration of pharmaceutical products (skill/competence) +- control production (skill/competence) +- develop bioremediation techniques (skill/competence) +- develop new food products (skill/competence) +- develop pharmaceutical drugs (skill/competence) +- develop scientific research protocols (skill/competence) +- develop vaccines (skill/competence) +- helminthology (knowledge) +- histology (knowledge) +- immunology (knowledge) +- laboratory techniques (knowledge) +- neoplasia (knowledge) +- parasitology (knowledge) +- perform laboratory tests (skill/competence) +- perform lectures (skill/competence) +- pharmaceutical chemistry (knowledge) +- pharmaceutical industry (knowledge) +- prepare compliance documents (skill/competence) +- production processes (knowledge) +- provide specialist pharmaceutical advice (skill/competence) +- recommend product improvements (skill/competence) +- supervise laboratory operations (skill/competence) +- teach in academic or vocational contexts (skill/competence) +- toxicology (knowledge) +- write research proposals (skill/competence) + + + +## Market evidence (job-ad analysis, 54 ads, as of 2026-07-17) + +Share of analyzed job ads mentioning the item (threshold ≥ 20 %). Source: JSearch/Adzuna APIs. + +### Hard skills + +- data analysis — **28 %** +- microbiological testing — **28 %** +- environmental monitoring — **24 %** + + diff --git a/references/tasks.md b/references/tasks.md new file mode 100644 index 0000000..229ab39 --- /dev/null +++ b/references/tasks.md @@ -0,0 +1,37 @@ +# Tasks & work activities — microbiologist + +Source: O*NET 30.3, occupation 19-1022.00 (Microbiologists). + +## Task statements + +- **[Core]** Isolate and maintain cultures of bacteria or other microorganisms in prescribed or developed media, controlling moisture, aeration, temperature, and nutrition. +- **[Core]** Monitor and perform tests on water, food, and the environment to detect harmful microorganisms or to obtain information about sources of pollution, contamination, or infection. +- **[Core]** Develop new products and procedures for sterilization, food and pharmaceutical supply preservation, or microbial contamination detection. +- **[Core]** Examine physiological, morphological, and cultural characteristics, using microscope, to identify and classify microorganisms in human, water, and food specimens. +- **[Core]** Provide laboratory services for health departments, community environmental health programs, and physicians needing information for diagnosis and treatment. +- **[Core]** Observe action of microorganisms upon living tissues of plants, higher animals, and other microorganisms, and on dead organic matter. +- **[Core]** Investigate the relationship between organisms and disease, including the control of epidemics and the effects of antibiotics on microorganisms. +- **[Core]** Supervise biological technologists and technicians and other scientists. +- **[Core]** Study growth, structure, development, and general characteristics of bacteria and other microorganisms to understand their relationship to human, plant, and animal health. +- **[Core]** Prepare technical reports and recommendations, based upon research outcomes. +- **[Core]** Study the structure and function of human, animal, and plant tissues, cells, pathogens, and toxins. +- **[Core]** Use a variety of specialized equipment, such as electron microscopes, gas and high-pressure liquid chromatographs, electrophoresis units, thermocyclers, fluorescence-activated cell sorters, and phosphorimagers. +- **[Core]** Conduct chemical analyses of substances such as acids, alcohols, and enzymes. +- **[Supplemental]** Research use of bacteria and microorganisms to develop vitamins, antibiotics, amino acids, grain alcohol, sugars, and polymers. + +## Detailed work activities + +- Analyze biological samples. +- Analyze chemical compounds or substances. +- Classify organisms based on their characteristics or behavior. +- Cultivate micro-organisms for study, testing, or medical preparations. +- Develop new or advanced products or production methods. +- Examine characteristics or behavior of living organisms. +- Inspect condition of natural environments. +- Monitor environmental impacts of production or development activities. +- Operate laboratory or field equipment. +- Prepare biological samples for testing or analysis. +- Prepare scientific or technical reports or presentations. +- Research diseases or parasites. +- Research microbiological or chemical processes or structures. +- Supervise scientific or technical personnel. diff --git a/references/tools.md b/references/tools.md new file mode 100644 index 0000000..aee8b8d --- /dev/null +++ b/references/tools.md @@ -0,0 +1,50 @@ +# Tools & technology — microbiologist + +Source: O*NET 30.3 'Software Skills' for 19-1022.00. + +| Software | Category | Hot technology | +|---|---|---| +| Microsoft Access | Data base user interface and query software | yes | +| Microsoft Outlook | Electronic mail software | yes | +| SAP software | Enterprise resource planning ERP software | yes | +| Microsoft Office software | Office suite software | yes | +| Microsoft Windows | Operating system software | yes | +| Microsoft PowerPoint | Presentation software | yes | +| Microsoft Excel | Spreadsheet software | yes | +| Microsoft Word | Word processing software | yes | +| Assistant Software for Antimicrobial Susceptibility Interpretation ASASI | Analytical or scientific software | | +| Basic Local Alignment Search Tool BLAST | Analytical or scientific software | | +| BD Biosciences CellQuest | Analytical or scientific software | | +| BD Biosciences CloneCyt | Analytical or scientific software | | +| Bruker Optics OPUS | Analytical or scientific software | | +| BtB Software Mycobacteriology Lab | Analytical or scientific software | | +| Codon Usage Database | Analytical or scientific software | | +| Computing Solutions LabSoft LIMS Micro | Analytical or scientific software | | +| DM2 Bills of Lading | Analytical or scientific software | | +| FindTarget | Analytical or scientific software | | +| FramePlot | Analytical or scientific software | | +| Gene Finder | Analytical or scientific software | | +| Gene recognition software | Analytical or scientific software | | +| Genie Interactive | Analytical or scientific software | | +| Image capture and analysis software | Analytical or scientific software | | +| Laboratory information management system LIMS | Analytical or scientific software | | +| NetLims AutoLims | Analytical or scientific software | | +| Pathogen Modeling Program PMP | Analytical or scientific software | | +| PHYLIP | Analytical or scientific software | | +| PIBWin | Analytical or scientific software | | +| PredictProtein | Analytical or scientific software | | +| Proscan | Analytical or scientific software | | +| Protein databases | Analytical or scientific software | | +| Protein Explorer | Analytical or scientific software | | +| ProtScale | Analytical or scientific software | | +| STARLIMS | Analytical or scientific software | | +| Statistical software | Analytical or scientific software | | +| TreeView | Analytical or scientific software | | +| Verity Software House ModFit LT | Analytical or scientific software | | +| Database management software | Data base user interface and query software | | +| WHONET | Data base user interface and query software | | +| Email software | Electronic mail software | | +| ComBase | Information retrieval or search software | | +| Web browser software | Internet browser software | | +| Computer Service & Support CLS-2000 Laboratory System | Medical software | | +| Orchard Software Orchard Harvest LIS | Medical software | |