feat: biochemist skill package v0.1.0

PROVENANCE.md

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+# Data provenance — biochemist
+
+Where the content of this skill package comes from, counted by
+content items (tasks, competences, tools, evidence entries, curated
+knowledge). Rendered live by Gitea:
+
+```mermaid
+%%{init: {'theme':'base','themeVariables':{'pie1':'#f9a825','pie2':'#1e88e5','pie3':'#ff355e','pie4':'#d97757','pie5':'#8e24aa','pieOuterStrokeWidth':'0px','pieSectionTextColor':'#fff'}}}%%
+pie showData
+    title Content sources — biochemist
+    "ESCO (occupation & competences)" : 94
+    "O*NET (tasks & tools)" : 125
+    "Job boards (market evidence)" : 92
+    "Anthropic official Claude skills" : 5
+    "External AI skill packs (mapped)" : 141
+```
+
+| Source | Items | Share | Files |
+|---|---|---|---|
+| ESCO (occupation & competences) | 94 | 20.6 % | references/profile.md, references/skills.md |
+| O*NET (tasks & tools) | 125 | 27.4 % | references/tasks.md, references/tools.md |
+| Job boards (market evidence) | 92 | 20.1 % | references/market.md (full report) + "Market evidence" headline sections |
+| Wikipedia & AI expert curation | 0 | 0.0 % | glossary, literature, usecases, intake, quality, evals/ |
+| Anthropic official Claude skills | 5 | 1.1 % | references/ai-skills.md, section "anthropics/skills" (official Claude Code skills) |
+| External AI skill packs (mapped) | 141 | 30.9 % | references/ai-skills.md (per-source attribution inside) |
+| Stack Exchange practitioner Q&A (CC-BY-SA) | 0 | 0.0 % | references/practitioner-qa.md (per-entry attribution inside) |
+
+Licensing: O*NET (USDOL/ETA, CC BY 4.0) · ESCO (© European Union) ·
+job-ad evidence via official APIs (JSearch/Adzuna) · Wikipedia content
+paraphrased with source URLs — never copied · external AI skills are
+linked, not copied (Apache-2.0/MIT/source-available, see ai-skills.md).

SKILL.md

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+---
+name: biochemist
+description: "Occupational skill for the role 'biochemist' (also: biochemistry research scientist, chemical biotechnologist, biochemistry studies scholar, biochemistry science researcher, biochemistry studies research scientist, biochemistry studies scientist). Use when the user asks for typical biochemist work such as: Keep abreast of new biochemistries, instrumentation, or software by reading scientific literature and attending professional conferences.; Provide statistical and computational tools for biologically based activities, such as genetic analysis, measurement of gene expression, or gene function determination.; Direct the work of technicians and information technology staff applying bioinformatics tools or applications in areas such as proteomics, transcriptomics, metabolomics, or clinical bioinformatics."
+---
+
+# Biochemist
+
+Biochemists study and perform research on the reactions caused by chemicals in living organisms. This includes performing research for the development or improvement of chemical-based products (e.g. medicine) aimed at improving the health of living organisms and at better understanding their reactions.
+
+## Core workflow
+
+1. Keep abreast of new biochemistries, instrumentation, or software by reading scientific literature and attending professional conferences.
+2. Provide statistical and computational tools for biologically based activities, such as genetic analysis, measurement of gene expression, or gene function determination.
+3. Direct the work of technicians and information technology staff applying bioinformatics tools or applications in areas such as proteomics, transcriptomics, metabolomics, or clinical bioinformatics.
+4. Develop new software applications or customize existing applications to meet specific scientific project needs.
+5. Develop data models and databases.
+6. Create or modify web-based bioinformatics tools.
+7. Design and apply bioinformatics algorithms including unsupervised and supervised machine learning, dynamic programming, or graphic algorithms.
+8. Create novel computational approaches and analytical tools as required by research goals.
+
+## How to use this skill
+
+- Read [references/profile.md](references/profile.md) for the occupation profile and scope.
+- Consult [references/tasks.md](references/tasks.md) for the full task and activity inventory.
+- Check [references/skills.md](references/skills.md) for essential vs. optional competences.
+- Check [references/tools.md](references/tools.md) for the software commonly used in this role.
+- See [references/ai-skills.md](references/ai-skills.md) — matched external AI agent skills (per-source attribution).
+
+## Key competences (essential)
+
+- analyse chemical substances
+- analytical chemistry
+- apply for research funding
+- apply research ethics and scientific integrity principles in research activities
+- apply safety procedures in laboratory
+- apply scientific methods
+- biological chemistry
+- biology
+- biotechnology
+- calibrate laboratory equipment
+- communicable diseases
+- communicate with a non-scientific audience
+- computational chemistry
+- conduct research across disciplines
+- demonstrate disciplinary expertise
+
+## Hot technologies
+
+- IBM SPSS Statistics
+- SAS
+- The MathWorks MATLAB
+- Docker
+- GitHub
+- Tableau
+- Salesforce software
+- Apache Hadoop
+- Microsoft SQL Server
+- MySQL
+
+---
+*Sources: ESCO v1.2.1 (http://data.europa.eu/esco/occupation/6df6c5cb-c1a2-42c8-acd0-1ee5563c36c1), O*NET 30.3 (19-1029.01). See manifest.json for licensing/attribution.*

manifest.json

@@ -0,0 +1,202 @@
+{
+  "name": "biochemist",
+  "title": "biochemist",
+  "version": "0.1.0",
+  "layer": "core",
+  "language": "en",
+  "generated": "2026-07-07",
+  "ids": {
+    "esco_uri": "http://data.europa.eu/esco/occupation/6df6c5cb-c1a2-42c8-acd0-1ee5563c36c1",
+    "esco_code": "2131.4.2",
+    "isco_group": "2131",
+    "onet_soc": "19-1029.01",
+    "crosswalk_match": "closeMatch"
+  },
+  "sources": [
+    {
+      "name": "ESCO",
+      "version": "1.2.1",
+      "url": "https://esco.ec.europa.eu/"
+    },
+    {
+      "name": "O*NET",
+      "version": "30.3",
+      "url": "https://www.onetcenter.org/",
+      "license": "CC BY 4.0"
+    }
+  ],
+  "attribution": "This package includes information from the O*NET Database (v30.3) by the U.S. Department of Labor, Employment and Training Administration (USDOL/ETA), CC BY 4.0. skillfactor is not endorsed by USDOL/ETA. ESCO data (v1.2.1) (c) European Union, used per the ESCO download conditions: https://esco.ec.europa.eu/en/use-esco/download",
+  "counts": {
+    "tasks": 20,
+    "dwas": 11,
+    "skills_essential": 54,
+    "skills_optional": 39,
+    "software": 93
+  },
+  "enrichment_ai_skills": {
+    "generated": "2026-07-14",
+    "method": "deterministic mapping (ISCO prefix + title/competence keywords)",
+    "sources": {
+      "anthropics/skills": {
+        "repo": "https://github.com/anthropics/skills",
+        "commit": "f6656c1",
+        "license": "Apache-2.0; the document skills (docx/pdf/pptx/xlsx) are source-available \u2014 see the LICENSE.txt in the upstream skill folder",
+        "skills": 2
+      },
+      "K-Dense-AI/claude-scientific-skills": {
+        "repo": "https://github.com/K-Dense-AI/claude-scientific-skills",
+        "commit": "4d97e29",
+        "license": "MIT",
+        "skills": 12
+      },
+      "K-Dense-AI/scientific-agent-skills": {
+        "repo": "https://github.com/K-Dense-AI/scientific-agent-skills",
+        "commit": "4d97e29",
+        "license": "MIT",
+        "skills": 12
+      },
+      "davila7/claude-code-templates": {
+        "repo": "https://github.com/davila7/claude-code-templates",
+        "commit": "fa79251",
+        "license": "MIT",
+        "skills": 12
+      },
+      "brycewang-stanford/Auto-Empirical-Research-Skills": {
+        "repo": "https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills",
+        "commit": "85bf545",
+        "license": "CC-BY-4.0",
+        "skills": 12
+      },
+      "fcakyon/claude-codex-settings": {
+        "repo": "https://github.com/fcakyon/claude-codex-settings",
+        "commit": "44b7c00",
+        "license": "Apache-2.0",
+        "skills": 1
+      },
+      "foryourhealth111-pixel/Vibe-Skills": {
+        "repo": "https://github.com/foryourhealth111-pixel/Vibe-Skills",
+        "commit": "34429a8",
+        "license": "Apache-2.0",
+        "skills": 12
+      },
+      "ferdinandobons/startup-skill": {
+        "repo": "https://github.com/ferdinandobons/startup-skill",
+        "commit": "a5f97c3",
+        "license": "MIT",
+        "skills": 1
+      },
+      "nexu-io/open-design": {
+        "repo": "https://github.com/nexu-io/open-design",
+        "commit": "4b66023",
+        "license": "Apache-2.0",
+        "skills": 2
+      },
+      "alirezarezvani/claude-skills": {
+        "repo": "https://github.com/alirezarezvani/claude-skills",
+        "commit": "0241f43",
+        "license": "MIT",
+        "skills": 1
+      },
+      "mohitagw15856/pm-claude-skills": {
+        "repo": "https://github.com/mohitagw15856/pm-claude-skills",
+        "commit": "876fa30",
+        "license": "MIT",
+        "skills": 1
+      },
+      "zebbern/claude-code-guide": {
+        "repo": "https://github.com/zebbern/claude-code-guide",
+        "commit": "d2c5280",
+        "license": "MIT",
+        "skills": 1
+      },
+      "OpenRaiser/NanoResearch": {
+        "repo": "https://github.com/OpenRaiser/NanoResearch",
+        "commit": "7144364",
+        "license": "MIT",
+        "skills": 1
+      },
+      "Orchestra-Research/AI-research-SKILLs": {
+        "repo": "https://github.com/Orchestra-Research/AI-research-SKILLs",
+        "commit": "773a529",
+        "license": "MIT",
+        "skills": 1
+      },
+      "zechenzhangAGI/AI-research-SKILLs": {
+        "repo": "https://github.com/zechenzhangAGI/AI-research-SKILLs",
+        "commit": "773a529",
+        "license": "MIT",
+        "skills": 1
+      },
+      "sanjay3290/ai-skills": {
+        "repo": "https://github.com/sanjay3290/ai-skills",
+        "commit": "3619692",
+        "license": "Apache-2.0",
+        "skills": 1
+      },
+      "makenotion/claude-code-notion-plugin": {
+        "repo": "https://github.com/makenotion/claude-code-notion-plugin",
+        "commit": "9847f2a",
+        "license": "no explicit license \u2014 referenced by link only",
+        "skills": 1
+      },
+      "open-gitagent/opengap": {
+        "repo": "https://github.com/open-gitagent/opengap",
+        "commit": "d7a8e2e",
+        "license": "MIT",
+        "skills": 1
+      },
+      "a5c-ai/babysitter": {
+        "repo": "https://github.com/a5c-ai/babysitter",
+        "commit": "44a5d58b",
+        "license": "MIT",
+        "skills": 1
+      },
+      "wanshuiyin/Auto-claude-code-research-in-sleep": {
+        "repo": "https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep",
+        "commit": "eb5c9d7",
+        "license": "MIT",
+        "skills": 2
+      },
+      "claude-world/director-mode-lite": {
+        "repo": "https://github.com/claude-world/director-mode-lite",
+        "commit": "9d0c333",
+        "license": "MIT",
+        "skills": 1
+      },
+      "BrianRWagner/ai-marketing-skills": {
+        "repo": "https://github.com/BrianRWagner/ai-marketing-skills",
+        "commit": "f36b34f",
+        "license": "no explicit license \u2014 referenced by link only",
+        "skills": 1
+      }
+    },
+    "total_skills": 80,
+    "tiers": {
+      "core": 78,
+      "adjacent": 2
+    }
+  },
+  "provenance": {
+    "items": {
+      "esco": 94,
+      "onet": 125,
+      "jobads": 92,
+      "wiki_ai": 0,
+      "anthropic": 5,
+      "ai_skills": 141,
+      "stackx": 0
+    },
+    "share_percent": {
+      "esco": 20.6,
+      "onet": 27.4,
+      "jobads": 20.1,
+      "wiki_ai": 0.0,
+      "anthropic": 1.1,
+      "ai_skills": 30.9,
+      "stackx": 0.0
+    },
+    "method": "content items per source category"
+  },
+  "collar": "white",
+  "computer_work": true
+}

references/ai-skills.md

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+# External AI agent skills — biochemist
+
+Proven, publicly available AI agent skills mapped to this occupation.
+Nothing is copied from the sources: every entry is a name, a one-line
+summary and a link to the upstream skill package. Each section names
+its source repository, commit, license and retrieval date.
+
+**Tiers:** `core` = the skill directly exercises a top market hard
+skill, tool or method (from gated job-ad evidence) or an essential
+ESCO competence of this occupation; `adjacent` =
+plausibly useful, secondary. Entries are capped at 12 per source
+and 80 in total per occupation (core first,
+strongest matches survive); everything beyond the caps is excluded
+and logged in the pipeline audit trail, not in this package.
+
+_Matched deterministically (ISCO group + title/competence keywords,
+tiered against market evidence + ESCO essentials) by
+`pipeline/p5_enrich_ai_skills.py` on 2026-07-14._
+
+## Source: anthropics/skills
+
+- Repository: [https://github.com/anthropics/skills](https://github.com/anthropics/skills) (commit `f6656c1`, retrieved 2026-07-14)
+- License: Apache-2.0; the document skills (docx/pdf/pptx/xlsx) are source-available — see the LICENSE.txt in the upstream skill folder
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `docx` | adjacent | Use this skill whenever the user wants to create, read, edit, or manipulate Word documents (.docx files) or Word templates (.dotx files). Triggers include: any mention of 'Word doc', 'word document', '.docx', '.dotx', or requests to … | [source](https://github.com/anthropics/skills/tree/main/skills/docx) |
+| `pdf` | adjacent | Use this skill whenever the user wants to do anything with PDF files. This includes reading or extracting text/tables from PDFs, combining or merging multiple PDFs into one, splitting PDFs apart, rotating pages, adding watermarks, creating … | [source](https://github.com/anthropics/skills/tree/main/skills/pdf) |
+
+## Source: a5c-ai/babysitter
+
+- Repository: [https://github.com/a5c-ai/babysitter](https://github.com/a5c-ai/babysitter) (commit `44a5d58b`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `research-first-dev` | core | Research-first development methodology that investigates existing solutions, brainstorms alternatives, and evaluates trade-offs before any implementation begins. | [source](https://github.com/a5c-ai/babysitter/tree/44a5d58b/library/methodologies/everything-claude-code/skills/research-first-dev) |
+
+## Source: alirezarezvani/claude-skills
+
+- Repository: [https://github.com/alirezarezvani/claude-skills](https://github.com/alirezarezvani/claude-skills) (commit `0241f43`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `product-skills` | core | Use when coordinating product work across the 12 bundled product sub-skills (RICE, OKRs, UX research, design tokens, competitive teardown, analytics, experiments, discovery, roadmaps, spec-to-repo, landing pages, SaaS scaffolding) or the 4 … | [source](https://github.com/alirezarezvani/claude-skills/tree/0241f43/product-team/skills/product-skills) |
+
+## Source: BrianRWagner/ai-marketing-skills
+
+- Repository: [https://github.com/BrianRWagner/ai-marketing-skills](https://github.com/BrianRWagner/ai-marketing-skills) (commit `f36b34f`, retrieved 2026-07-14)
+- License: no explicit license — referenced by link only
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `last30days` | core | Research any topic across Reddit, X, and web from the last 30 days. Get current trends, real community sentiment, and actionable insights in 7 minutes vs 2 hours manual research. | [source](https://github.com/BrianRWagner/ai-marketing-skills/tree/f36b34f/last30days) |
+
+## Source: brycewang-stanford/Auto-Empirical-Research-Skills
+
+- Repository: [https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills) (commit `85bf545`, retrieved 2026-07-14)
+- License: CC-BY-4.0
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `methodology-skills` | core | 13 research methodology skills. Trigger: study design, methodology selection, scientific reasoning, mentoring. Design: rigorous methods frameworks covering qualitative, quantitative, and mixed approaches. | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/research/methodology) |
+| `claude-scientific-guide` | core | Ready-to-use agent skills for scientific research and engineering | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/research/methodology/claude-scientific-guide) |
+| `academic-baseline` | core | Use when working on any empirical academic research context — paper writing, data analysis, literature review, or any task involving citations, results, or publication artifacts. Establishes non-negotiable principles that govern all other … | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/60-regisely-superpapers/skills/academic-baseline) |
+| `econ-audit` | core | Audit economic analysis outputs (fiscal briefings, macro briefings, market research, longlists, and other quantitative economic documents) against methodology standards, academic literature, and common errors. Runs structured checks across … | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/58-charlescoverdale-econstack/econ-audit) |
+| `hud` | core | Diverga HUD (Heads-Up Display) management skill. Configure and manage the research project statusline display. Supports multiple presets: research, checkpoint, memory, minimal. Triggers: "hud", "statusline", "display settings | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/25-HosungYou-Diverga/skills/hud) |
+| `psychology-research-guide` | core | Psychological research methods, experimental design, and analysis | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/domains/social-science/psychology-research-guide) |
+| `automation-skills` | core | 10 research automation skills. Trigger: automating experiments, tracking results, reproducible pipelines. Design: ML experiment management, workflow orchestration, and lab automation tools. | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/research/automation) |
+| `deep-research-skills` | core | 13 deep research & systematic reviews skills. Trigger: systematic reviews, multi-source synthesis, comprehensive literature surveys. Design: multi-step research protocols with quality assessment and evidence grading. | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/research/deep-research) |
+| `law-skills` | core | 9 legal research skills. Trigger: legal research, case law analysis, regulatory compliance. Design: legal databases, citation networks, and judicial analytics tools. | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/domains/law) |
+| `research-ideation` | core | This skill should be used when the user asks to "brainstorm research ideas", "use 5W1H framework", "identify research gaps", "conduct gap analysis", "start research project", "conduct literature review", "define research question", "select … | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/33-Galaxy-Dawn-claude-scholar/skills/research-ideation) |
+| `a5` | core | Agent A5 - Paradigm & Worldview Advisor - Philosophical foundations for research design. Covers ontology, epistemology, axiology, and methodology alignment. Use when: establishing philosophical foundations, justifying methodological … | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/25-HosungYou-Diverga/skills/a5) |
+| `action-research-guide` | core | Design and conduct action research and participatory studies | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/research/methodology/action-research-guide) |
+
+## Source: claude-world/director-mode-lite
+
+- Repository: [https://github.com/claude-world/director-mode-lite](https://github.com/claude-world/director-mode-lite) (commit `9d0c333`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `handoff-gemini` | core | Delegate long-context analysis, research, and large-document summarization to Google Gemini CLI (1M-token context) via non-interactive `gemini -p`, preserving Claude context. Use when the user says 'use gemini'/'hand off to gemini' or a … | [source](https://github.com/claude-world/director-mode-lite/tree/9d0c333/skills/handoff-gemini) |
+
+## Source: davila7/claude-code-templates
+
+- Repository: [https://github.com/davila7/claude-code-templates](https://github.com/davila7/claude-code-templates) (commit `fa79251`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `latex-posters` | core | Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/latex-posters) |
+| `scientific-critical-thinking` | core | Evaluate research rigor. Assess methodology, experimental design, statistical validity, biases, confounding, evidence quality (GRADE, Cochrane ROB), for critical analysis of scientific claims. | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/scientific-critical-thinking) |
+| `market-research-reports` | core | Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics and generate-image, … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/market-research-reports) |
+| `research-engineer` | core | An uncompromising Academic Research Engineer. Operates with absolute scientific rigor, objective criticism, and zero flair. Focuses on theoretical correctness, formal verification, and optimal implementation across any required technology. | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/ai-research/research-engineer) |
+| `scientific-slides` | core | Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/scientific-slides) |
+| `venue-templates` | core | Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publication venues (Nature, Science, PLOS, IEEE, ACM), academic conferences (NeurIPS, ICML, CVPR, CHI), research posters, and … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/venue-templates) |
+| `denario` | core | Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/denario) |
+| `scientific-brainstorming` | core | Research ideation partner. Generate hypotheses, explore interdisciplinary connections, challenge assumptions, develop methodologies, identify research gaps, for creative scientific problem-solving. | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/scientific-brainstorming) |
+| `scientific-writing` | core | Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process: (1) create section outlines with key points using research-lookup, (2) convert to flowing … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/scientific-writing) |
+| `biomni` | core | Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/biomni) |
+| `openalex-database` | core | Query and analyze scholarly literature using the OpenAlex database. This skill should be used when searching for academic papers, analyzing research trends, finding works by authors or institutions, tracking citations, discovering open … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/openalex-database) |
+| `brenda-database` | core | Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis. | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/brenda-database) |
+
+## Source: fcakyon/claude-codex-settings
+
+- Repository: [https://github.com/fcakyon/claude-codex-settings](https://github.com/fcakyon/claude-codex-settings) (commit `44b7c00`, retrieved 2026-07-14)
+- License: Apache-2.0
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `paper-search-usage` | core | This skill should be used when user asks to "search for papers", "find research papers", "search arXiv", "search PubMed", "find academic papers", "search IEEE", "search Scopus", or "look up scientific literature". | [source](https://github.com/fcakyon/claude-codex-settings/tree/44b7c00/plugins/paper-search-tools/skills/paper-search-usage) |
+
+## Source: ferdinandobons/startup-skill
+
+- Repository: [https://github.com/ferdinandobons/startup-skill](https://github.com/ferdinandobons/startup-skill) (commit `a5f97c3`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `startup-design` | core | Design, validate, and plan a startup from scratch. Covers market research, competitive analysis, business model, brand identity, product definition, financial projections, and validation experiments. Trigger when the user has a startup … | [source](https://github.com/ferdinandobons/startup-skill/tree/a5f97c3/startup-design) |
+
+## Source: foryourhealth111-pixel/Vibe-Skills
+
+- Repository: [https://github.com/foryourhealth111-pixel/Vibe-Skills](https://github.com/foryourhealth111-pixel/Vibe-Skills) (commit `34429a8`, retrieved 2026-07-14)
+- License: Apache-2.0
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `scientific-brainstorming` | core | Open-ended scientific ideation partner. Use for research gaps, mechanism exploration, interdisciplinary connections, assumptions, possible research directions, and lightweight literature matrix or A+B paper-combination idea mapping. For … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/scientific-brainstorming) |
+| `scientific-reporting` | core | Write research/technical reports with strong structure + figure standards. Supports Markdown/HTML/PDF outputs (Quarto optional), executive summary, methods, results, discussion, and reproducibility appendix. | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/scientific-reporting) |
+| `scientific-slides` | core | Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/scientific-slides) |
+| `denario` | core | Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/denario) |
+| `slides-as-code` | core | Build research slides with text-first source (Slidev/Marp/Reveal/Quarto) and reproducible export (PDF). Includes structure, figure reuse rules, and quality checklist for top-tier scientific presentations. | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/slides-as-code) |
+| `openalex-database` | core | Query and analyze scholarly literature using the OpenAlex database. This skill should be used when searching for academic papers, analyzing research trends, finding works by authors or institutions, tracking citations, discovering open … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/openalex-database) |
+| `scholar-evaluation` | core | Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across research quality dimensions including problem formulation, methodology, analysis, and writing with quantitative scoring and … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/scholar-evaluation) |
+| `statistical-analysis` | core | Statistical analysis toolkit. Hypothesis tests (t-test, ANOVA, chi-square), regression, correlation, Bayesian stats, power analysis, assumption checks, APA reporting, for academic research. | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/statistical-analysis) |
+| `literature-review` | core | Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/literature-review) |
+| `citation-management` | core | Comprehensive citation management for academic research. Resolve bibliographic identifiers, extract accurate metadata, validate citations, deduplicate references, and generate properly formatted BibTeX entries. This skill should be used … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/citation-management) |
+| `designing-experiments` | core | Design experiments and quasi-experiments before analysis. Use when choosing study design, treatment/control structure, outcomes, assumptions, validation plans after scientific experiment failure, or which of DiD, ITS, synthetic control, or … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/designing-experiments) |
+| `exploratory-data-analysis` | core | Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/exploratory-data-analysis) |
+
+## Source: K-Dense-AI/claude-scientific-skills
+
+- Repository: [https://github.com/K-Dense-AI/claude-scientific-skills](https://github.com/K-Dense-AI/claude-scientific-skills) (commit `4d97e29`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `latex-posters` | core | Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/latex-posters) |
+| `market-research-reports` | core | Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics and generate-image, … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/market-research-reports) |
+| `research-lookup` | core | Look up current research and scientific information across three backends: fast web search via parallel-cli (default), the Parallel Chat API for deep multi-source synthesis, and Perplexity sonar-pro-search for scholarly paper searches. … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/research-lookup) |
+| `scientific-brainstorming` | core | Creative research ideation and exploration. Use for open-ended brainstorming sessions, exploring interdisciplinary connections, challenging assumptions, or identifying research gaps. Best for early-stage research planning when you do not … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/scientific-brainstorming) |
+| `scientific-slides` | core | Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/scientific-slides) |
+| `venue-templates` | core | Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publication venues (Nature, Science, PLOS, IEEE, ACM), academic conferences (NeurIPS, ICML, CVPR, CHI), research posters, and … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/venue-templates) |
+| `autoskill` | core | Observe the user's screen via screenpipe, detect repeated research workflows, match them against existing scientific-agent-skills, and draft new skills (or composition recipes that chain existing ones) for the patterns not yet covered. Use … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/autoskill) |
+| `exa-search` | core | Web toolkit powered by Exa, tuned for scientific and technical content. Use this skill when the user needs to search the web or fetch/extract URL content. Covers: web search (semantic lookups, research, current info — with optional … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/exa-search) |
+| `scientific-writing` | core | Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with (1) section outlines with key points using research-lookup then (2) convert to flowing … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/scientific-writing) |
+| `hugging-science` | core | Use when the user is doing AI/ML work in a scientific domain such as biology, chemistry, physics, astronomy, climate, genomics, materials, medicine, ecology, energy, engineering, math, drug discovery, protein design, weather modeling, … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/hugging-science) |
+| `scholar-evaluation` | core | Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across research quality dimensions including problem formulation, methodology, analysis, and writing with quantitative scoring and … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/scholar-evaluation) |
+| `citation-management` | core | Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/citation-management) |
+
+## Source: K-Dense-AI/scientific-agent-skills
+
+- Repository: [https://github.com/K-Dense-AI/scientific-agent-skills](https://github.com/K-Dense-AI/scientific-agent-skills) (commit `4d97e29`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `latex-posters` | core | Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/latex-posters) |
+| `market-research-reports` | core | Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics and generate-image, … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/market-research-reports) |
+| `research-lookup` | core | Look up current research and scientific information across three backends: fast web search via parallel-cli (default), the Parallel Chat API for deep multi-source synthesis, and Perplexity sonar-pro-search for scholarly paper searches. … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/research-lookup) |
+| `scientific-brainstorming` | core | Creative research ideation and exploration. Use for open-ended brainstorming sessions, exploring interdisciplinary connections, challenging assumptions, or identifying research gaps. Best for early-stage research planning when you do not … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/scientific-brainstorming) |
+| `scientific-slides` | core | Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/scientific-slides) |
+| `venue-templates` | core | Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publication venues (Nature, Science, PLOS, IEEE, ACM), academic conferences (NeurIPS, ICML, CVPR, CHI), research posters, and … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/venue-templates) |
+| `autoskill` | core | Observe the user's screen via screenpipe, detect repeated research workflows, match them against existing scientific-agent-skills, and draft new skills (or composition recipes that chain existing ones) for the patterns not yet covered. Use … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/autoskill) |
+| `exa-search` | core | Web toolkit powered by Exa, tuned for scientific and technical content. Use this skill when the user needs to search the web or fetch/extract URL content. Covers: web search (semantic lookups, research, current info — with optional … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/exa-search) |
+| `scientific-writing` | core | Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with (1) section outlines with key points using research-lookup then (2) convert to flowing … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/scientific-writing) |
+| `hugging-science` | core | Use when the user is doing AI/ML work in a scientific domain such as biology, chemistry, physics, astronomy, climate, genomics, materials, medicine, ecology, energy, engineering, math, drug discovery, protein design, weather modeling, … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/hugging-science) |
+| `scholar-evaluation` | core | Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across research quality dimensions including problem formulation, methodology, analysis, and writing with quantitative scoring and … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/scholar-evaluation) |
+| `citation-management` | core | Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/citation-management) |
+
+## Source: makenotion/claude-code-notion-plugin
+
+- Repository: [https://github.com/makenotion/claude-code-notion-plugin](https://github.com/makenotion/claude-code-notion-plugin) (commit `9847f2a`, retrieved 2026-07-14)
+- License: no explicit license — referenced by link only
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `notion-research-documentation` | core | Searches across your Notion workspace, synthesizes findings from multiple pages, and creates comprehensive research documentation saved as new Notion pages. Turns scattered information into structured reports with proper citations and … | [source](https://github.com/makenotion/claude-code-notion-plugin/tree/9847f2a/skills/notion/research-documentation) |
+
+## Source: mohitagw15856/pm-claude-skills
+
+- Repository: [https://github.com/mohitagw15856/pm-claude-skills](https://github.com/mohitagw15856/pm-claude-skills) (commit `876fa30`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `research-protocol` | core | Write a structured research protocol or study design document. Use when asked to write a research protocol, study protocol, research plan, methodology section, or research proposal. Produces a complete protocol with objectives, … | [source](https://github.com/mohitagw15856/pm-claude-skills/tree/876fa30/plugins/pm-research/skills/research-protocol) |
+
+## Source: nexu-io/open-design
+
+- Repository: [https://github.com/nexu-io/open-design](https://github.com/nexu-io/open-design) (commit `4b66023`, retrieved 2026-07-14)
+- License: Apache-2.0
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `kami-deck` | core | A lab-meeting deck on gut-microbiome links to sleep quality — the design, the results, the caveats, and the next experiment. Built as a decision-grade academic research deck for lab group, PI. | [source](https://github.com/nexu-io/open-design/tree/4b66023/design-templates/kami-deck) |
+| `html-ppt-zhangzara-monochrome` | core | A grant proposal on CRISPR base-editing for sickle-cell disease — the hypothesis, the approach, the milestones, and the risk. Built as a decision-grade academic research deck for grant review committee. | [source](https://github.com/nexu-io/open-design/tree/4b66023/design-templates/html-ppt-zhangzara-monochrome) |
+
+## Source: open-gitagent/opengap
+
+- Repository: [https://github.com/open-gitagent/opengap](https://github.com/open-gitagent/opengap) (commit `d7a8e2e`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `research` | core | Researches a topic by breaking it into subtopics, gathering factual information with reasoning, and producing a structured summary with key findings and open questions. Use when the user asks to research, investigate, look up, summarize a … | [source](https://github.com/open-gitagent/opengap/tree/d7a8e2e/examples/lyzr-agent/skills/research) |
+
+## Source: OpenRaiser/NanoResearch
+
+- Repository: [https://github.com/OpenRaiser/NanoResearch](https://github.com/OpenRaiser/NanoResearch) (commit `7144364`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `academic-plotting` | core | Generates publication-quality figures for ML papers from research context. Given a paper section or description, extracts system components and relationships to generate architecture diagrams via Gemini. Given experiment results or data, … | [source](https://github.com/OpenRaiser/NanoResearch/tree/7144364/skills/vendor-ai-research/academic-plotting) |
+
+## Source: Orchestra-Research/AI-research-SKILLs
+
+- Repository: [https://github.com/Orchestra-Research/AI-research-SKILLs](https://github.com/Orchestra-Research/AI-research-SKILLs) (commit `773a529`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `academic-plotting` | core | Generates publication-quality figures for ML papers from research context. Given a paper section or description, extracts system components and relationships to generate architecture diagrams via Gemini. Given experiment results or data, … | [source](https://github.com/Orchestra-Research/AI-research-SKILLs/tree/773a529/20-ml-paper-writing/academic-plotting) |
+
+## Source: sanjay3290/ai-skills
+
+- Repository: [https://github.com/sanjay3290/ai-skills](https://github.com/sanjay3290/ai-skills) (commit `3619692`, retrieved 2026-07-14)
+- License: Apache-2.0
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `deep-research` | core | Execute autonomous multi-step research using Google Gemini Deep Research Agent. Use for: market analysis, competitive landscaping, literature reviews, technical research, due diligence. Takes 2-10 minutes but produces detailed, cited … | [source](https://github.com/sanjay3290/ai-skills/tree/3619692/skills/deep-research) |
+
+## Source: wanshuiyin/Auto-claude-code-research-in-sleep
+
+- Repository: [https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep](https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep) (commit `eb5c9d7`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `research-lit` | core | Search and analyze research papers, find related work, summarize key ideas. Use when user says "find papers", "related work", "literature review", "what does this paper say", or needs to understand academic papers. | [source](https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep/tree/eb5c9d7/skills/research-lit) |
+| `research-wiki` | core | Persistent research knowledge base that accumulates papers, ideas, experiments, claims, and their relationships across the entire research lifecycle. Inspired by Karpathy's LLM Wiki pattern. Use when user says \"知识库\", \"research wiki\", … | [source](https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep/tree/eb5c9d7/skills/research-wiki) |
+
+## Source: zebbern/claude-code-guide
+
+- Repository: [https://github.com/zebbern/claude-code-guide](https://github.com/zebbern/claude-code-guide) (commit `d2c5280`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `vc-industry-research` | core | Generate professional primary market / venture capital industry research reports, including sector deep-dives, investment memos, and market analysis. Produces detailed PDF reports covering TMT, consumer, healthcare, and industrials. … | [source](https://github.com/zebbern/claude-code-guide/tree/d2c5280/skills/vc-industry-research) |
+
+## Source: zechenzhangAGI/AI-research-SKILLs
+
+- Repository: [https://github.com/zechenzhangAGI/AI-research-SKILLs](https://github.com/zechenzhangAGI/AI-research-SKILLs) (commit `773a529`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `academic-plotting` | core | Generates publication-quality figures for ML papers from research context. Given a paper section or description, extracts system components and relationships to generate architecture diagrams via Gemini. Given experiment results or data, … | [source](https://github.com/zechenzhangAGI/AI-research-SKILLs/tree/773a529/20-ml-paper-writing/academic-plotting) |

references/berufsbild-de.md

@@ -0,0 +1,71 @@
+# Berufsbild (Deutschland) — Biochemiker/in
+
+> **Quelle:** BERUFENET, Bundesagentur für Arbeit — Beruf-ID 58688,
+> KldB 2010: B 41284 · via öffentliche BERUFENET-API,
+> abgerufen 2026-07-12. Automatisches Label-Matching
+> (Score 1.00); Inhalte paraphrasiert/gekürzt, Volltext beim
+> Original: https://web.arbeitsagentur.de/berufenet/beruf/58688
+
+## Aufgaben und Tätigkeiten kompakt
+
+Biochemiker bzw. Biochemikerinnen arbeiten in verschiedenen Bereichen. In der Forschung analysieren sie z.B. den Aufbau von Molekülen, den Stoffwechsel oder die Zellstrukturen von Organismen und veröffentlichen ihre Ergebnisse. An Staatliche und staatlich anerkannte Bildungseinrichtung des tertiären Bereichs; dazu zählen forschungsorientierte Universitäten und gleichgestellte Hochschulen, z.B. Kirchliche und Philosophisch-Theologische Hochschulen; sie alle haben das Promotionsrecht; außerdem gibt es praxis- und anwendungsorientierte Fachhochschulen bzw. Hochschulen für angewandte Wissenschaften sowie Duale Hochschulen
+" name="Hochschule (HS)">Hochschulen führen sie Lehrveranstaltungen durch und nehmen Prüfungen ab.
+In der chemischen oder pharmazeutischen Industrie arbeiten sie daran, medizinisch verwendbare Stoffe zu finden und Medikamente zu optimieren. Sie wirken als Bindeglied zwischen Arzneimittelproduktion und -anwendung, verbessern verfahrenstechnische Abläufe oder prüfen die Qualität der Produkte. Zudem nehmen sie an Zulassungsverfahren für neue Medikamente teil oder arbeiten in der pharmazeutischen Beratung.
+
+## Tätigkeitsbezeichnungen
+
+Biochemiker/in
+
+Berufsbezeichnung in englischer SpracheBiochemist (m/f)
+
+Berufsbezeichnung in französischer SpracheBiochimiste (m/f)
+
+## Die Tätigkeit im Überblick
+
+Biochemiker bzw. Biochemikerinnen untersuchen chemische sowie physikalisch-chemische Prozesse auf molekularer Ebene, stellen biochemische Erzeugnisse her oder arbeiten in der Produktentwicklung, der Qualitätssicherung sowie im Beratungswesen.
+
+## Trends
+
+CO2-KreislaufwirtschaftCarbon Capture and Utilization (CCU) bezeichnet die Abscheidung von Kohlenstoffdioxid (CO2) aus Abgasen, die dann einen weiteren Nutzungszyklus durchlaufen. CCU zielt also auf eine direkte Wiederverwendung ab. Bei Carbon Capture and Storage (CCS) ist das Ziel hingegen die Speicherung von aus der Atmosphäre entzogenem CO2. CCU trägt zur Reduzierung von Emissionen bei und wirkt dem Treibhauseffekt entgegen. Techniken wie die (modifizierte) Photosynthese, Gasfermentation oder Elektrobiosynthese ermöglichen den Gewinn verschiedener Erzeugnisse, z.B. synthetische Kraftstoffe, Futtermittel, Farbstoffe oder auch Leichtbaumaterialien. Fach- und Führungskräfte werden sich mit entsprechenden Weiterbildungen auf die verschiedenen Anwendungsgebiete vorbereiten.
+Nachhaltigkeit in der chemischen und pharmazeutischen IndustrieNachhaltigkeit entwickelt sich zu einem zentralen Innovations- und Wettbewerbsfaktor in der chemischen und pharmazeutischen Industrie. Im Fokus stehen die Dekarbonisierung von Produktionsprozessen, die Umsetzung einer Kreislaufwirtschaft sowie die Entwicklung ressourcenschonender und sicherer Produkte im Sinne der Green Chemistry. Unternehmen arbeiten an der Substitution besonders besorgniserregender Stoffe, bspw. aus der Gruppe der PFAS, an innovativen Recyclingverfahren und an der Etablierung transparenter und nachhaltiger Lieferketten. Zudem eröffnen datengetriebene Methoden und Künstliche Intelligenz (KI) neue Möglichkeiten zur Optimierung von Produktionsprozessen sowie zur beschleunigten Entwicklung von Wirkstoffen und Materialien. Für Fach- und Führungskräfte gewinnen interdisziplinäre Kompetenzen, Innovationsfähigkeit und die kontinuierliche Auseinandersetzung mit regulatorischen, technologischen und gesellschaftlichen Anforderungen zunehmend an Bedeutung.
+Smarte Technologien für das Labor 4.0Die Digitalisierung von Laboren entwickelt sich zunehmend zu hochautomatisierten und datengetriebenen Arbeitsumgebungen. Moderne Laborinformations- und Managementsysteme vernetzen Geräte, Analytik sowie Dokumentation. Sie schaffen die Grundlage für die effiziente Nutzung großer Datenmengen. Künstliche Intelligenz (KI) unterstützt die Auswertung komplexer Analysedaten, identifiziert Muster und beschleunigt die Entwicklung neuer Produkte und Verfahren. Fortschritte in der Laborrobotik, automatisierten Synthese und sogenannten "Self-Driving Labs" ermöglichen es, Versuchsreihen weitgehend autonom zu planen, durchzuführen und auf Basis 
+
+## Aufgaben und Tätigkeiten (Beschreibung)
+
+Worum geht es?Biochemiker/innen untersuchen in der wissenschaftlichen Forschung chemische sowie physikalisch-chemische Prozesse auf molekularer Ebene. Daneben können sie in der Herstellung biochemischer Erzeugnisse tätig sein, in der Produktentwicklung, der Qualitätssicherung oder im Beratungswesen.
+Wissenschaftliche Forschung und LehreBiochemiker/innen befassen sich z.B. mit dem Zellaufbau und mit Prozessen in der Zelle, untersuchen die Übertragung von Informationen durch Proteine oder erforschen Zelltypen und Antikörper, die das Immunsystem bilden. In der Bio- bzw. Gentechnologie arbeiten sie daran, durch gezielte Mutationen z.B. von Bakterien und Hefen Stoffe von pharmakologischem oder wirtschaftlichem Interesse in technischem Maßstab zugänglich zu machen. In der Biochemie der Naturstoffe befassen sie sich mit der Strukturanalyse, der Biosynthese und dem biologischen Abbau etwa von Antibiotika. Im Fachgebiet Kombination aus Biologie und Technik. Nutzbarmachung von Naturprinzipien für verschiedene technische Bereiche
+" name="Bionik">Bionik untersuchen sie Struktur- und Organisationsprinzipien aus der Natur und entwickeln aufgrund ihrer Erkenntnisse bionische Materialien wie selbstreinigende Oberflächen. In der klinischen Biochemie untersuchen sie z.B. genetisch oder umweltbedingte Stoffwechselkrankheiten, prüfen das Verhalten z.B. von Medikamenten im Organismus oder untersuchen die Auswirkung von Zivilisationsprodukten wie Pflanzenschutzmitteln auf Mikroorganismen, Pflanzen, Tiere und Menschen und leiten daraus Grenzwerte ab.
+Sie veröffentlichen die Forschungsergebnisse und machen sie so anderen Wissenschaftlern sowie Studierenden zugänglich. Auf Tagungen und Kongressen referieren sie über Erkenntnisse. Sie halten Vorlesungen und Seminare, betreuen wissenschaftliche Arbeiten und nehmen Prüfungen ab. 
+Für eigenständige wissenschaftliche Tätigkeiten sind i.d.R. ein Masterstudium und eine Erlangung des Doktorgrades, je nach fachlicher Ausrichtung mit entsprechendem Zusatz, z.B. Dr. phil. (Geisteswissenschaften); befähigt zur eigenständigen Forschung an Universitäten und gleichgestellten Hochschulen; Voraussetzung ist i.d.R. ein Hochschulabschluss, z.B. Master oder Staatsexamen; Promotionsverfahren umfassen eine Doktorarbeit (auch: Dissertation) und eine mündliche Prüfung; Promotionsrecht steht i.d.R. den Universitäten und gleichgestellten Hochschulen zu, Promotionsordnungen der einzelnen Hochschulen regeln das Promotionsverfahren
+" name="Promotion">Promotio
+
+## Aufgaben und Tätigkeiten im Einzelnen
+
+Lebenserscheinungen von Organismen chemisch erforschen, z.B. Stoffwechsel, Vererbung, Zellteilung
+
+ neue medizinisch verwendbare Stoffe auffinden oder entwickeln, bestehende Medikamente weiterentwickeln und verbessern
+
+chemische und pharmazeutische Produkte aus der Forschung auf ihre Anwendungsmöglichkeiten und optimalen Verarbeitungsmethoden untersuchen und überprüfen
+
+Wissenschaft und Lehrean Forschungsprojekten mitwirken und Berichte verfassen
+
+Lehrveranstaltungen durchführen, ggf. Prüfungen abnehmen
+
+ Examens- und Erlangung des Doktorgrades, je nach fachlicher Ausrichtung mit entsprechendem Zusatz, z.B. Dr. phil. (Geisteswissenschaften); befähigt zur eigenständigen Forschung an Universitäten und gleichgestellten Hochschulen; Voraussetzung ist i.d.R. ein Hochschulabschluss, z.B. Master oder Staatsexamen; Promotionsverfahren umfassen eine Doktorarbeit (auch: Dissertation) und eine mündliche Prüfung; Promotionsrecht steht i.d.R. den Universitäten und gleichgestellten Hochschulen zu, Promotionsordnungen der einzelnen Hochschulen regeln das Promotionsverfahren
+" name="Promotion">Promotionskandidaten/-kandidatinnen betreuen 
+
+Entwicklung und ProduktionVerarbeitungs- und Testverfahren entwickeln, im Labor entwickelte Produktions- und Aufarbeitungsverfahren auf den großtechnischen Maßstab übertragen und anpassen
+
+Produkte verbessern, nach neuen Anwendungen für vorhandene Produkte suchen, neue Produkte entwickeln
+
+Herstellungsprozess hinsichtlich Qualität, Umweltverträglichkeit und betriebswirtschaftlicher Vorgaben überwachen
+
+ggf. Validierungsaktivitäten entwickeln und dokumentieren, um Qualitätsstandards einzuhalten
+
+ Beratung und Vertriebwissenschaftlichen Kontakt zwischen Produktion und Anwendung bzw. Erprobung in Kliniken pflegen
+
+Ärzte, Kliniken, Forschungseinrichtungen z.B. über neue Medikamente informieren
+
+bei der Zulassung und Registrierung von Arzneimitteln mitwirken 
+
+Marketingstrategien, Konzepte für das Produktmanagement im Vertrieb und für die Kundenberatung entwickeln

references/market.md

@@ -0,0 +1,119 @@
+# Market evidence report — biochemist
+
+Source: **58 real job ads** (JSearch API, countries: us 48, n/a 10), extracted into the MSSQL evidence store; as of 2026-07-09.
+This report contains extracted, aggregated facts only — no ad text is
+reproduced (copyright / platform terms).
+
+## Seniority distribution
+
+| Seniority | Ads | Share |
+|---|---|---|
+| mid | 30 | 52 % |
+| n/a | 12 | 21 % |
+| junior | 10 | 17 % |
+| senior | 5 | 9 % |
+| lead | 1 | 2 % |
+
+## Tools — full market ranking
+
+| # | Item | Ads | Share |
+|---|---|---|---|
+| 1 | HPLC | 4 | 7 % |
+| 2 | mass spectrometry | 4 | 7 % |
+| 3 | Agilent HPLC | 3 | 5 % |
+| 4 | Cytiva AKTA | 3 | 5 % |
+| 5 | GraphPad Prism | 3 | 5 % |
+| 6 | SDS-PAGE | 3 | 5 % |
+| 7 | SEC-MALS | 3 | 5 % |
+| 8 | SPR | 3 | 5 % |
+
+## Hard skills — full market ranking
+
+| # | Item | Ads | Share |
+|---|---|---|---|
+| 1 | data analysis | 23 | 40 % |
+| 2 | biochemistry | 17 | 29 % |
+| 3 | protein purification | 15 | 26 % |
+| 4 | experimental design | 9 | 16 % |
+| 5 | clinical laboratory testing | 6 | 10 % |
+| 6 | medical research | 6 | 10 % |
+| 7 | physiology | 6 | 10 % |
+| 8 | protein expression | 6 | 10 % |
+| 9 | structural biology | 6 | 10 % |
+| 10 | assay development | 5 | 9 % |
+| 11 | biochemical analysis | 5 | 9 % |
+| 12 | biochemical assay development | 5 | 9 % |
+| 13 | drug safety testing | 5 | 9 % |
+| 14 | troubleshooting | 5 | 9 % |
+| 15 | enzyme kinetics | 4 | 7 % |
+| 16 | molecular cloning | 4 | 7 % |
+| 17 | analytical chemistry | 3 | 5 % |
+| 18 | biophysical characterization | 3 | 5 % |
+| 19 | chromatography | 3 | 5 % |
+| 20 | method validation | 3 | 5 % |
+| 21 | protein biochemistry | 3 | 5 % |
+| 22 | regulatory compliance | 3 | 5 % |
+| 23 | tissue culture | 3 | 5 % |
+
+## Methods — full market ranking
+
+| # | Item | Ads | Share |
+|---|---|---|---|
+| 1 | standard operating procedures (SOPs) | 4 | 7 % |
+
+## Responsibilities — full market ranking
+
+| # | Item | Ads | Share |
+|---|---|---|---|
+| 1 | data analysis | 16 | 28 % |
+| 2 | laboratory testing | 7 | 12 % |
+| 3 | data interpretation | 6 | 10 % |
+| 4 | experiment execution | 6 | 10 % |
+| 5 | assay execution | 5 | 9 % |
+| 6 | equipment maintenance | 5 | 9 % |
+| 7 | research execution | 5 | 9 % |
+| 8 | research planning | 5 | 9 % |
+| 9 | experiment design | 4 | 7 % |
+| 10 | project management | 4 | 7 % |
+| 11 | assay design | 3 | 5 % |
+| 12 | data documentation | 3 | 5 % |
+| 13 | data preparation | 3 | 5 % |
+| 14 | data presentation | 3 | 5 % |
+| 15 | experiment performance | 3 | 5 % |
+| 16 | lab notebook maintenance | 3 | 5 % |
+| 17 | process improvement | 3 | 5 % |
+| 18 | protein design | 3 | 5 % |
+| 19 | protocol development | 3 | 5 % |
+| 20 | report preparation | 3 | 5 % |
+
+## Job title variants in the market
+
+| Title | Ads |
+|---|---|
+| None | 10 |
+| Biochemist | 7 |
+| Biochemist I | 3 |
+| Scientist - Protein Biochemist | 3 |
+| Analytical Clinical Biochemist | 2 |
+| Biochemist 1 | 2 |
+| Associate Scientist, Product Biochemistry | 1 |
+| Biochemist - Process Characterization and Controls (Wed - Sat) | 1 |
+| Biochemist I (Must Have Chromatography, SOP, Protein Purification & Conjugation) - Urgent Need | 1 |
+| Biochemist I (Must Have Tissue culture skills) | 1 |
+| Biochemist I/II - Conjugation | 1 |
+| Biochemistry Scientist | 1 |
+| Entry Level Biochemist | 1 |
+| Lead Analytical Biochemist | 1 |
+| Microbiologist/Biochemist | 1 |
+| NJDOL Innovation Research Fellow - Ph.D. Biochemist / Enzymologist | 1 |
+| Principal Research Scientist I, Protein Biochemistry | 1 |
+| Principal Scientist, Head of Protein Biochemistry, Viral Vaccines | 1 |
+| Protein Biochemist | 1 |
+| Protein Purification Scientist | 1 |
+| Quality Control Biochemist | 1 |
+| Research Associate - Biochemistry (m/f/d) | 1 |
+| Research Associate 1- (Biochem and Molecular Biology) | 1 |
+| Research Associate, Research Scientist, Biomedical Science | 1 |
+| Research Scientist Biochemistry & Molecular Genetics, Yang Lab | 1 |
+
+Methodology: entities extracted per ad ({hard_skills, tools, methods, responsibilities, seniority}), normalized, counted as DISTINCT ads per entity; report threshold ≥ 3 ads. Headline sections in skills.md/tools.md use the stricter ≥ 20 % threshold.

references/profile.md

@@ -0,0 +1,33 @@
+# Occupation profile — biochemist
+
+- **ESCO URI:** http://data.europa.eu/esco/occupation/6df6c5cb-c1a2-42c8-acd0-1ee5563c36c1
+- **ESCO code:** 2131.4.2
+- **ISCO-08 group:** 2131 — Biologists, botanists, zoologists and related professionals
+- **O*NET-SOC:** 19-1029.01 — Bioinformatics Scientists (match: closeMatch)
+
+## Description (ESCO)
+
+Biochemists study and perform research on the reactions caused by chemicals in living organisms. This includes performing research for the development or improvement of chemical-based products (e.g. medicine) aimed at improving the health of living organisms and at better understanding their reactions.
+
+## Definition
+
+nan
+
+## Alternative labels
+
+- biochemistry research scientist
+- chemical biotechnologist
+- biochemistry studies scholar
+- biochemistry science researcher
+- biochemistry studies research scientist
+- biochemistry studies scientist
+- biochemistry researcher
+- biochemistry studies researcher
+- biochemistry studies analyst
+- biological chemist
+- biochemistry scientist
+- biochemistry scholar
+- biochemistry research analyst
+- biochemistry studies research analyst
+- biochemistry analyst
+- bio-chemist

references/skills.md

@@ -0,0 +1,120 @@
+# Competences — biochemist
+
+Source: ESCO v1.2.1 occupation-skill relations (http://data.europa.eu/esco/occupation/6df6c5cb-c1a2-42c8-acd0-1ee5563c36c1).
+
+## Essential
+
+- **analyse chemical substances** (skill/competence)
+- **analytical chemistry** (knowledge)
+- **apply for research funding** (skill/competence)
+- **apply research ethics and scientific integrity principles in research activities** (skill/competence)
+- **apply safety procedures in laboratory** (skill/competence)
+- **apply scientific methods** (skill/competence)
+- **biological chemistry** (knowledge)
+- **biology** (knowledge)
+- **biotechnology** (knowledge)
+- **calibrate laboratory equipment** (skill/competence)
+- **communicable diseases** (knowledge)
+- **communicate with a non-scientific audience** (skill/competence)
+- **computational chemistry** (knowledge)
+- **conduct research across disciplines** (skill/competence)
+- **demonstrate disciplinary expertise** (skill/competence)
+- **develop professional network with researchers and scientists** (skill/competence)
+- **disseminate results to the scientific community** (skill/competence)
+- **draft scientific or academic papers and technical documentation** (skill/competence)
+- **evaluate research activities** (skill/competence)
+- **genetics** (knowledge)
+- **increase the impact of science on policy and society** (skill/competence)
+- **integrate gender dimension in research** (skill/competence)
+- **interact professionally in research and professional environments** (skill/competence)
+- **laboratory techniques** (knowledge)
+- **life sciences** (knowledge)
+- **maintain laboratory equipment** (skill/competence)
+- **manage findable accessible interoperable and reusable data** (skill/competence)
+- **manage intellectual property rights** (skill/competence)
+- **manage open publications** (skill/competence)
+- **manage personal professional development** (skill/competence)
+- **manage research data** (skill/competence)
+- **mentor individuals** (skill/competence)
+- **molecular biology** (knowledge)
+- **multidisciplinary research** (knowledge)
+- **operate open source software** (skill/competence)
+- **oxidation** (knowledge)
+- **perform chemical experiments** (skill/competence)
+- **perform laboratory tests** (skill/competence)
+- **perform project management** (skill/competence)
+- **perform scientific research** (skill/competence)
+- **pharmaceutical chemistry** (knowledge)
+- **pharmacology** (knowledge)
+- **promote open innovation in research** (skill/competence)
+- **promote the participation of citizens in scientific and research activities** (skill/competence)
+- **promote the transfer of knowledge** (skill/competence)
+- **publish academic research** (skill/competence)
+- **research design** (knowledge)
+- **scientific literature** (knowledge)
+- **scientific research methodology** (knowledge)
+- **speak different languages** (skill/competence)
+- **spectroscopy** (knowledge)
+- **synthesise information** (skill/competence)
+- **think abstractly** (skill/competence)
+- **write scientific publications** (skill/competence)
+
+## Optional
+
+- advise on crop diseases (skill/competence)
+- analyse blood samples (skill/competence)
+- analyse cell cultures (skill/competence)
+- analyse medication's impact on brain (skill/competence)
+- apply blended learning (skill/competence)
+- archive scientific documentation (skill/competence)
+- assess environmental impact (skill/competence)
+- clinical biochemistry (knowledge)
+- conduct genome research (skill/competence)
+- contribute to registration of pharmaceutical products (skill/competence)
+- control production (skill/competence)
+- cryopreservation (knowledge)
+- develop product design (skill/competence)
+- develop scientific research protocols (skill/competence)
+- develop scientific theories (skill/competence)
+- evolutionary biology (knowledge)
+- examine samples in dermatology (skill/competence)
+- explain the molecular basis of a disease to patients (skill/competence)
+- identify poisons (skill/competence)
+- industrial research and development (knowledge)
+- medical laboratory technology (knowledge)
+- microbiology-bacteriology (knowledge)
+- monitor patients during clinical tests (skill/competence)
+- nanomaterials (knowledge)
+- perform lectures (skill/competence)
+- pest control in plants (knowledge)
+- plant disease control (knowledge)
+- prepare compliance documents (skill/competence)
+- prepare lesson content (skill/competence)
+- production processes (knowledge)
+- recommend product improvements (skill/competence)
+- solid phase microextraction (knowledge)
+- stem cells (knowledge)
+- supervise laboratory operations (skill/competence)
+- synthetic biology (knowledge)
+- teach in academic or vocational contexts (skill/competence)
+- toxicology (knowledge)
+- virology (knowledge)
+- write research proposals (skill/competence)
+
+<!-- market-evidence -->
+
+## Market evidence (job-ad analysis, 58 ads, as of 2026-07-09)
+
+Share of analyzed job ads mentioning the item (threshold ≥ 20 %). Source: JSearch/Adzuna APIs.
+
+### Hard skills
+
+- data analysis — **40 %**
+- biochemistry — **29 %**
+- protein purification — **26 %**
+
+### Responsibilities
+
+- data analysis — **28 %**
+
+<!-- market-evidence -->

references/tasks.md

@@ -0,0 +1,40 @@
+# Tasks & work activities — biochemist
+
+Source: O*NET 30.3, occupation 19-1029.01 (Bioinformatics Scientists).
+
+## Task statements
+
+- **[Core]** Keep abreast of new biochemistries, instrumentation, or software by reading scientific literature and attending professional conferences.
+- **[Core]** Provide statistical and computational tools for biologically based activities, such as genetic analysis, measurement of gene expression, or gene function determination.
+- **[Core]** Direct the work of technicians and information technology staff applying bioinformatics tools or applications in areas such as proteomics, transcriptomics, metabolomics, or clinical bioinformatics.
+- **[Core]** Develop new software applications or customize existing applications to meet specific scientific project needs.
+- **[Core]** Develop data models and databases.
+- **[Core]** Create or modify web-based bioinformatics tools.
+- **[Core]** Design and apply bioinformatics algorithms including unsupervised and supervised machine learning, dynamic programming, or graphic algorithms.
+- **[Core]** Create novel computational approaches and analytical tools as required by research goals.
+- **[Core]** Compile data for use in activities, such as gene expression profiling, genome annotation, or structural bioinformatics.
+- **[Core]** Communicate research results through conference presentations, scientific publications, or project reports.
+- **[Core]** Manipulate publicly accessible, commercial, or proprietary genomic, proteomic, or post-genomic databases.
+- **[Core]** Consult with researchers to analyze problems, recommend technology-based solutions, or determine computational strategies.
+- **[Core]** Analyze large molecular datasets, such as raw microarray data, genomic sequence data, or proteomics data, for clinical or basic research purposes.
+- **[Supplemental]** Recommend new systems and processes to improve operations.
+- **[Supplemental]** Confer with departments, such as marketing, business development, or operations, to coordinate product development or improvement.
+- **[Supplemental]** Collaborate with software developers in the development and modification of commercial bioinformatics software.
+- **[Supplemental]** Test new and updated bioinformatics tools and software.
+- **[Supplemental]** Prepare summary statistics of information regarding human genomes.
+- **[Supplemental]** Instruct others in the selection and use of bioinformatics tools.
+- **[Supplemental]** Improve user interfaces to bioinformatics software and databases.
+
+## Detailed work activities
+
+- Advise others on business or operational matters.
+- Advise others on the development or use of new technologies.
+- Analyze biological samples.
+- Collaborate with technical specialists to resolve design or development problems.
+- Develop software or applications for scientific or technical use.
+- Develop technical or scientific databases.
+- Prepare scientific or technical reports or presentations.
+- Research genetic characteristics or expression.
+- Review professional literature to maintain professional knowledge.
+- Supervise scientific or technical personnel.
+- Train personnel in technical or scientific procedures.

references/tools.md

@@ -0,0 +1,99 @@
+# Tools & technology — biochemist
+
+Source: O*NET 30.3 'Software Skills' for 19-1029.01.
+
+| Software | Category | Hot technology |
+|---|---|---|
+| IBM SPSS Statistics | Analytical or scientific software | yes |
+| SAS | Analytical or scientific software | yes |
+| The MathWorks MATLAB | Analytical or scientific software | yes |
+| Docker | Application server software | yes |
+| GitHub | Application server software | yes |
+| Tableau | Business intelligence and data analysis software | yes |
+| Salesforce software | Customer relationship management CRM software | yes |
+| Apache Hadoop | Data base management system software | yes |
+| Microsoft SQL Server | Data base management system software | yes |
+| MySQL | Data base management system software | yes |
+| NoSQL | Data base management system software | yes |
+| Oracle PL/SQL | Data base management system software | yes |
+| Amazon Web Services AWS software | Data base user interface and query software | yes |
+| Microsoft Access | Data base user interface and query software | yes |
+| Oracle Database | Data base user interface and query software | yes |
+| Structured query language SQL | Data base user interface and query software | yes |
+| C | Development environment software | yes |
+| Microsoft Azure software | Development environment software | yes |
+| Microsoft Visual Basic for Applications VBA | Development environment software | yes |
+| Microsoft Visual Studio | Development environment software | yes |
+| Ruby | Development environment software | yes |
+| Microsoft SharePoint | Document management software | yes |
+| Extensible markup language XML | Enterprise application integration software | yes |
+| SAP software | Enterprise resource planning ERP software | yes |
+| Git | File versioning software | yes |
+| C# | Object or component oriented development software | yes |
+| C++ | Object or component oriented development software | yes |
+| jQuery | Object or component oriented development software | yes |
+| Microsoft SQL Server Reporting Services SSRS | Object or component oriented development software | yes |
+| Oracle Java | Object or component oriented development software | yes |
+| Perl | Object or component oriented development software | yes |
+| Python | Object or component oriented development software | yes |
+| R | Object or component oriented development software | yes |
+| Scala | Object or component oriented development software | yes |
+| PostgreSQL | Object oriented data base management software | yes |
+| Microsoft Office software | Office suite software | yes |
+| Bash | Operating system software | yes |
+| Linux | Operating system software | yes |
+| Shell script | Operating system software | yes |
+| UNIX | Operating system software | yes |
+| Microsoft PowerPoint | Presentation software | yes |
+| Microsoft Excel | Spreadsheet software | yes |
+| Django | Web platform development software | yes |
+| Hypertext markup language HTML | Web platform development software | yes |
+| JavaScript | Web platform development software | yes |
+| JavaScript Object Notation JSON | Web platform development software | yes |
+| Microsoft Active Server Pages ASP | Web platform development software | yes |
+| PHP | Web platform development software | yes |
+| Accelrys Pipeline Pilot | Analytical or scientific software |  |
+| Bioconductor | Analytical or scientific software |  |
+| Biomatters Geneious | Analytical or scientific software |  |
+| BioPerl | Analytical or scientific software |  |
+| BLAT | Analytical or scientific software |  |
+| Bowtie | Analytical or scientific software |  |
+| BWA | Analytical or scientific software |  |
+| Canu | Analytical or scientific software |  |
+| ClustalW | Analytical or scientific software |  |
+| Cufflinks | Analytical or scientific software |  |
+| Cytel StatXact | Analytical or scientific software |  |
+| Data visualization software | Analytical or scientific software |  |
+| dbSNP | Analytical or scientific software |  |
+| DNA sequencing software | Analytical or scientific software |  |
+| ENSEMBL | Analytical or scientific software |  |
+| GenBank | Analytical or scientific software |  |
+| Genedata Expressionist | Analytical or scientific software |  |
+| GenePattern | Analytical or scientific software |  |
+| Genome Analysis Toolkit GATK | Analytical or scientific software |  |
+| Illumina Laboratory Information Management System LIMS | Analytical or scientific software |  |
+| Life Technologies SOLiD | Analytical or scientific software |  |
+| Life Technologies Vector NTI | Analytical or scientific software |  |
+| NCBI RefSeq | Analytical or scientific software |  |
+| Primer3 | Analytical or scientific software |  |
+| Public genomic databases | Analytical or scientific software |  |
+| RNA sequencing software | Analytical or scientific software |  |
+| Roche 454 Life Sciences GS Data Analysis | Analytical or scientific software |  |
+| Snakemake | Analytical or scientific software |  |
+| StataCorp Stata | Analytical or scientific software |  |
+| Tibco S-PLUS | Analytical or scientific software |  |
+| TopHat | Analytical or scientific software |  |
+| Velvet | Analytical or scientific software |  |
+| TIBCO Spotfire S+ | Business intelligence and data analysis software |  |
+| Relational database management software | Data base management system software |  |
+| Apache Accumulo | Data base user interface and query software |  |
+| Bioconductor software | Data base user interface and query software |  |
+| Teradata software | Data base user interface and query software |  |
+| Formula translation/translator FORTRAN | Development environment software |  |
+| Software development tools | Development environment software |  |
+| Web browser software | Internet browser software |  |
+| Apache Groovy | Object or component oriented development software |  |
+| Object oriented development environment software | Object or component oriented development software |  |
+| Apache HTTP Server | Portal server software |  |
+| User interface design software | Program testing software |  |
+| Oracle JavaServer Pages JSP | Web platform development software |  |