feat: biologist skill package v0.1.0

2026-08-14 16:47:02 +02:00
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--- a/PROVENANCE.md
+++ b/PROVENANCE.md
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+# Data provenance — biologist
+
+Where the content of this skill package comes from, counted by
+content items (tasks, competences, tools, evidence entries, curated
+knowledge). Rendered live by Gitea:
+
+```mermaid
+%%{init: {'theme':'base','themeVariables':{'pie1':'#f9a825','pie2':'#1e88e5','pie3':'#ff355e','pie4':'#d97757','pie5':'#8e24aa','pieOuterStrokeWidth':'0px','pieSectionTextColor':'#fff'}}}%%
+pie showData
+    title Content sources — biologist
+    "ESCO (occupation & competences)" : 99
+    "O*NET (tasks & tools)" : 106
+    "Job boards (market evidence)" : 63
+    "Anthropic official Claude skills" : 5
+    "External AI skill packs (mapped)" : 141
+```
+
+| Source | Items | Share | Files |
+|---|---|---|---|
+| ESCO (occupation & competences) | 99 | 23.9 % | references/profile.md, references/skills.md |
+| O*NET (tasks & tools) | 106 | 25.6 % | references/tasks.md, references/tools.md |
+| Job boards (market evidence) | 63 | 15.2 % | references/market.md (full report) + "Market evidence" headline sections |
+| Wikipedia & AI expert curation | 0 | 0.0 % | glossary, literature, usecases, intake, quality, evals/ |
+| Anthropic official Claude skills | 5 | 1.2 % | references/ai-skills.md, section "anthropics/skills" (official Claude Code skills) |
+| External AI skill packs (mapped) | 141 | 34.1 % | references/ai-skills.md (per-source attribution inside) |
+| Stack Exchange practitioner Q&A (CC-BY-SA) | 0 | 0.0 % | references/practitioner-qa.md (per-entry attribution inside) |
+
+Licensing: O*NET (USDOL/ETA, CC BY 4.0) · ESCO (© European Union) ·
+job-ad evidence via official APIs (JSearch/Adzuna) · Wikipedia content
+paraphrased with source URLs — never copied · external AI skills are
+linked, not copied (Apache-2.0/MIT/source-available, see ai-skills.md).
--- a/SKILL.md
+++ b/SKILL.md
@@ -0,0 +1,72 @@
+---
+name: biologist
+description: "Occupational skill for the role 'biologist' (also: ornithologist, herpetologist, mycologist, zoologist, entomologist, natural science taxonomist). Use when the user asks for typical biologist work such as: Develop and maintain liaisons and effective working relations with groups and individuals, agencies, and the public to encourage cooperative management strategies or to develop information and interpret findings.; Program and use computers to store, process, and analyze data.; Collect and analyze biological data about relationships among and between organisms and their environment."
+---
+
+# Biologist
+
+Biologists study living organisms and life in its broader extent in combination with its environment. Through research, they strive to explain the functional mechanisms, interactions, and evolution of organisms.
+
+## Core workflow
+
+1. Develop and maintain liaisons and effective working relations with groups and individuals, agencies, and the public to encourage cooperative management strategies or to develop information and interpret findings.
+2. Program and use computers to store, process, and analyze data.
+3. Collect and analyze biological data about relationships among and between organisms and their environment.
+4. Communicate test results to state and federal representatives and general public.
+5. Identify, classify, and study structure, behavior, ecology, physiology, nutrition, culture, and distribution of plant and animal species.
+6. Represent employer in a technical capacity at conferences.
+7. Teach or supervise students and perform research at universities and colleges.
+8. Supervise biological technicians and technologists and other scientists.
+
+## How to use this skill
+
+- Read [references/profile.md](references/profile.md) for the occupation profile and scope.
+- Consult [references/tasks.md](references/tasks.md) for the full task and activity inventory.
+- Check [references/skills.md](references/skills.md) for essential vs. optional competences.
+- Check [references/tools.md](references/tools.md) for the software commonly used in this role.
+- See [references/ai-skills.md](references/ai-skills.md) — matched external AI agent skills (per-source attribution).
+
+## Key competences (essential)
+
+- apply for research funding
+- apply research ethics and scientific integrity principles in research activities
+- apply scientific methods
+- biology
+- botany
+- collect biological data
+- communicate with a non-scientific audience
+- conduct research across disciplines
+- conduct research on fauna
+- conduct research on flora
+- demonstrate disciplinary expertise
+- develop professional network with researchers and scientists
+- disseminate results to the scientific community
+- draft scientific or academic papers and technical documentation
+- ecosystem management
+
+## Hot technologies
+
+- IBM SPSS Statistics
+- The MathWorks MATLAB
+- Microsoft Access
+- Structured query language SQL
+- ESRI ArcGIS software
+- Adobe Photoshop
+- C++
+- Oracle Java
+- Perl
+- Python
+
+
+<!-- hot-tech -->
+
+## Hot technologies
+
+Top tools from 30 gated job ads (see references/market.md, as of 2026-07-09):
+
+- Microsoft Office — 10 %
+
+<!-- hot-tech -->
+
+---
+*Sources: ESCO v1.2.1 (http://data.europa.eu/esco/occupation/eee68e13-8248-43bb-a9fb-959832a6c217), O*NET 30.3 (19-1029.04). See manifest.json for licensing/attribution.*
--- a/manifest.json
+++ b/manifest.json
@@ -0,0 +1,202 @@
+{
+  "name": "biologist",
+  "title": "biologist",
+  "version": "0.1.0",
+  "layer": "core",
+  "language": "en",
+  "generated": "2026-07-07",
+  "ids": {
+    "esco_uri": "http://data.europa.eu/esco/occupation/eee68e13-8248-43bb-a9fb-959832a6c217",
+    "esco_code": "2131.4",
+    "isco_group": "2131",
+    "onet_soc": "19-1029.04",
+    "crosswalk_match": "exactMatch"
+  },
+  "sources": [
+    {
+      "name": "ESCO",
+      "version": "1.2.1",
+      "url": "https://esco.ec.europa.eu/"
+    },
+    {
+      "name": "O*NET",
+      "version": "30.3",
+      "url": "https://www.onetcenter.org/",
+      "license": "CC BY 4.0"
+    }
+  ],
+  "attribution": "This package includes information from the O*NET Database (v30.3) by the U.S. Department of Labor, Employment and Training Administration (USDOL/ETA), CC BY 4.0. skillfactor is not endorsed by USDOL/ETA. ESCO data (v1.2.1) (c) European Union, used per the ESCO download conditions: https://esco.ec.europa.eu/en/use-esco/download",
+  "counts": {
+    "tasks": 22,
+    "dwas": 27,
+    "skills_essential": 38,
+    "skills_optional": 60,
+    "software": 56
+  },
+  "enrichment_ai_skills": {
+    "generated": "2026-07-14",
+    "method": "deterministic mapping (ISCO prefix + title/competence keywords)",
+    "sources": {
+      "anthropics/skills": {
+        "repo": "https://github.com/anthropics/skills",
+        "commit": "f6656c1",
+        "license": "Apache-2.0; the document skills (docx/pdf/pptx/xlsx) are source-available \u2014 see the LICENSE.txt in the upstream skill folder",
+        "skills": 2
+      },
+      "davila7/claude-code-templates": {
+        "repo": "https://github.com/davila7/claude-code-templates",
+        "commit": "fa79251",
+        "license": "MIT",
+        "skills": 12
+      },
+      "K-Dense-AI/claude-scientific-skills": {
+        "repo": "https://github.com/K-Dense-AI/claude-scientific-skills",
+        "commit": "4d97e29",
+        "license": "MIT",
+        "skills": 12
+      },
+      "K-Dense-AI/scientific-agent-skills": {
+        "repo": "https://github.com/K-Dense-AI/scientific-agent-skills",
+        "commit": "4d97e29",
+        "license": "MIT",
+        "skills": 12
+      },
+      "fcakyon/claude-codex-settings": {
+        "repo": "https://github.com/fcakyon/claude-codex-settings",
+        "commit": "44b7c00",
+        "license": "Apache-2.0",
+        "skills": 1
+      },
+      "foryourhealth111-pixel/Vibe-Skills": {
+        "repo": "https://github.com/foryourhealth111-pixel/Vibe-Skills",
+        "commit": "34429a8",
+        "license": "Apache-2.0",
+        "skills": 12
+      },
+      "brycewang-stanford/Auto-Empirical-Research-Skills": {
+        "repo": "https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills",
+        "commit": "85bf545",
+        "license": "CC-BY-4.0",
+        "skills": 12
+      },
+      "zebbern/claude-code-guide": {
+        "repo": "https://github.com/zebbern/claude-code-guide",
+        "commit": "d2c5280",
+        "license": "MIT",
+        "skills": 1
+      },
+      "sanjay3290/ai-skills": {
+        "repo": "https://github.com/sanjay3290/ai-skills",
+        "commit": "3619692",
+        "license": "Apache-2.0",
+        "skills": 1
+      },
+      "OpenRaiser/NanoResearch": {
+        "repo": "https://github.com/OpenRaiser/NanoResearch",
+        "commit": "7144364",
+        "license": "MIT",
+        "skills": 1
+      },
+      "Orchestra-Research/AI-research-SKILLs": {
+        "repo": "https://github.com/Orchestra-Research/AI-research-SKILLs",
+        "commit": "773a529",
+        "license": "MIT",
+        "skills": 1
+      },
+      "zechenzhangAGI/AI-research-SKILLs": {
+        "repo": "https://github.com/zechenzhangAGI/AI-research-SKILLs",
+        "commit": "773a529",
+        "license": "MIT",
+        "skills": 1
+      },
+      "nexu-io/open-design": {
+        "repo": "https://github.com/nexu-io/open-design",
+        "commit": "4b66023",
+        "license": "Apache-2.0",
+        "skills": 2
+      },
+      "wanshuiyin/Auto-claude-code-research-in-sleep": {
+        "repo": "https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep",
+        "commit": "eb5c9d7",
+        "license": "MIT",
+        "skills": 2
+      },
+      "claude-world/director-mode-lite": {
+        "repo": "https://github.com/claude-world/director-mode-lite",
+        "commit": "9d0c333",
+        "license": "MIT",
+        "skills": 1
+      },
+      "makenotion/claude-code-notion-plugin": {
+        "repo": "https://github.com/makenotion/claude-code-notion-plugin",
+        "commit": "9847f2a",
+        "license": "no explicit license \u2014 referenced by link only",
+        "skills": 1
+      },
+      "a5c-ai/babysitter": {
+        "repo": "https://github.com/a5c-ai/babysitter",
+        "commit": "44a5d58b",
+        "license": "MIT",
+        "skills": 1
+      },
+      "open-gitagent/opengap": {
+        "repo": "https://github.com/open-gitagent/opengap",
+        "commit": "d7a8e2e",
+        "license": "MIT",
+        "skills": 1
+      },
+      "mohitagw15856/pm-claude-skills": {
+        "repo": "https://github.com/mohitagw15856/pm-claude-skills",
+        "commit": "876fa30",
+        "license": "MIT",
+        "skills": 1
+      },
+      "ferdinandobons/startup-skill": {
+        "repo": "https://github.com/ferdinandobons/startup-skill",
+        "commit": "a5f97c3",
+        "license": "MIT",
+        "skills": 1
+      },
+      "BrianRWagner/ai-marketing-skills": {
+        "repo": "https://github.com/BrianRWagner/ai-marketing-skills",
+        "commit": "f36b34f",
+        "license": "no explicit license \u2014 referenced by link only",
+        "skills": 1
+      },
+      "BrianRWagner/ai-marketing-claude-code-skills": {
+        "repo": "https://github.com/BrianRWagner/ai-marketing-claude-code-skills",
+        "commit": "f36b34f",
+        "license": "no explicit license \u2014 referenced by link only",
+        "skills": 1
+      }
+    },
+    "total_skills": 80,
+    "tiers": {
+      "core": 78,
+      "adjacent": 2
+    }
+  },
+  "provenance": {
+    "items": {
+      "esco": 99,
+      "onet": 106,
+      "jobads": 63,
+      "wiki_ai": 0,
+      "anthropic": 5,
+      "ai_skills": 141,
+      "stackx": 0
+    },
+    "share_percent": {
+      "esco": 23.9,
+      "onet": 25.6,
+      "jobads": 15.2,
+      "wiki_ai": 0.0,
+      "anthropic": 1.2,
+      "ai_skills": 34.1,
+      "stackx": 0.0
+    },
+    "method": "content items per source category"
+  },
+  "collar": "white",
+  "computer_work": true
+}
--- a/references/ai-skills.md
+++ b/references/ai-skills.md
@@ -0,0 +1,274 @@
+# External AI agent skills — biologist
+
+Proven, publicly available AI agent skills mapped to this occupation.
+Nothing is copied from the sources: every entry is a name, a one-line
+summary and a link to the upstream skill package. Each section names
+its source repository, commit, license and retrieval date.
+
+**Tiers:** `core` = the skill directly exercises a top market hard
+skill, tool or method (from gated job-ad evidence) or an essential
+ESCO competence of this occupation; `adjacent` =
+plausibly useful, secondary. Entries are capped at 12 per source
+and 80 in total per occupation (core first,
+strongest matches survive); everything beyond the caps is excluded
+and logged in the pipeline audit trail, not in this package.
+
+_Matched deterministically (ISCO group + title/competence keywords,
+tiered against market evidence + ESCO essentials) by
+`pipeline/p5_enrich_ai_skills.py` on 2026-07-14._
+
+## Source: anthropics/skills
+
+- Repository: [https://github.com/anthropics/skills](https://github.com/anthropics/skills) (commit `f6656c1`, retrieved 2026-07-14)
+- License: Apache-2.0; the document skills (docx/pdf/pptx/xlsx) are source-available — see the LICENSE.txt in the upstream skill folder
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `docx` | adjacent | Use this skill whenever the user wants to create, read, edit, or manipulate Word documents (.docx files) or Word templates (.dotx files). Triggers include: any mention of 'Word doc', 'word document', '.docx', '.dotx', or requests to … | [source](https://github.com/anthropics/skills/tree/main/skills/docx) |
+| `pdf` | adjacent | Use this skill whenever the user wants to do anything with PDF files. This includes reading or extracting text/tables from PDFs, combining or merging multiple PDFs into one, splitting PDFs apart, rotating pages, adding watermarks, creating … | [source](https://github.com/anthropics/skills/tree/main/skills/pdf) |
+
+## Source: a5c-ai/babysitter
+
+- Repository: [https://github.com/a5c-ai/babysitter](https://github.com/a5c-ai/babysitter) (commit `44a5d58b`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `planning-patterns` | core | Structured planning methodology with research, brainstorming, phased plan creation, risk assessment, and plan-to-build continuity. | [source](https://github.com/a5c-ai/babysitter/tree/44a5d58b/library/methodologies/cc10x/skills/planning-patterns) |
+
+## Source: BrianRWagner/ai-marketing-claude-code-skills
+
+- Repository: [https://github.com/BrianRWagner/ai-marketing-claude-code-skills](https://github.com/BrianRWagner/ai-marketing-claude-code-skills) (commit `f36b34f`, retrieved 2026-07-14)
+- License: no explicit license — referenced by link only
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `last30days` | core | Research any topic across Reddit, X, and web from the last 30 days. Get current trends, real community sentiment, and actionable insights in 7 minutes vs 2 hours manual research. | [source](https://github.com/BrianRWagner/ai-marketing-claude-code-skills/tree/f36b34f/last30days) |
+
+## Source: BrianRWagner/ai-marketing-skills
+
+- Repository: [https://github.com/BrianRWagner/ai-marketing-skills](https://github.com/BrianRWagner/ai-marketing-skills) (commit `f36b34f`, retrieved 2026-07-14)
+- License: no explicit license — referenced by link only
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `last30days` | core | Research any topic across Reddit, X, and web from the last 30 days. Get current trends, real community sentiment, and actionable insights in 7 minutes vs 2 hours manual research. | [source](https://github.com/BrianRWagner/ai-marketing-skills/tree/f36b34f/last30days) |
+
+## Source: brycewang-stanford/Auto-Empirical-Research-Skills
+
+- Repository: [https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills) (commit `85bf545`, retrieved 2026-07-14)
+- License: CC-BY-4.0
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `methodology-skills` | core | 13 research methodology skills. Trigger: study design, methodology selection, scientific reasoning, mentoring. Design: rigorous methods frameworks covering qualitative, quantitative, and mixed approaches. | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/research/methodology) |
+| `claude-scientific-guide` | core | Ready-to-use agent skills for scientific research and engineering | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/research/methodology/claude-scientific-guide) |
+| `academic-baseline` | core | Use when working on any empirical academic research context — paper writing, data analysis, literature review, or any task involving citations, results, or publication artifacts. Establishes non-negotiable principles that govern all other … | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/60-regisely-superpapers/skills/academic-baseline) |
+| `hud` | core | Diverga HUD (Heads-Up Display) management skill. Configure and manage the research project statusline display. Supports multiple presets: research, checkpoint, memory, minimal. Triggers: "hud", "statusline", "display settings | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/25-HosungYou-Diverga/skills/hud) |
+| `research-ideation` | core | This skill should be used when the user asks to "brainstorm research ideas", "use 5W1H framework", "identify research gaps", "conduct gap analysis", "start research project", "conduct literature review", "define research question", "select … | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/33-Galaxy-Dawn-claude-scholar/skills/research-ideation) |
+| `econ-audit` | core | Audit economic analysis outputs (fiscal briefings, macro briefings, market research, longlists, and other quantitative economic documents) against methodology standards, academic literature, and common errors. Runs structured checks across … | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/58-charlescoverdale-econstack/econ-audit) |
+| `literature-review` | core | Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research … | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/03-K-Dense-AI-claude-scientific-skills/literature-review) |
+| `psychology-research-guide` | core | Psychological research methods, experimental design, and analysis | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/domains/social-science/psychology-research-guide) |
+| `law-skills` | core | 9 legal research skills. Trigger: legal research, case law analysis, regulatory compliance. Design: legal databases, citation networks, and judicial analytics tools. | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/domains/law) |
+| `peer-review-guide` | core | Conduct thorough, constructive peer reviews and evaluate research papers | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/research/paper-review/peer-review-guide) |
+| `action-research-guide` | core | Design and conduct action research and participatory studies | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/research/methodology/action-research-guide) |
+| `new-project` | core | Full research pipeline from idea to paper. Orchestrates all phases — discovery, strategy, analysis, writing, peer review, and submission. Use when starting a new research project from scratch. | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/16-hsantanna88-clo-author/dot-claude/skills/new-project) |
+
+## Source: claude-world/director-mode-lite
+
+- Repository: [https://github.com/claude-world/director-mode-lite](https://github.com/claude-world/director-mode-lite) (commit `9d0c333`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `handoff-gemini` | core | Delegate long-context analysis, research, and large-document summarization to Google Gemini CLI (1M-token context) via non-interactive `gemini -p`, preserving Claude context. Use when the user says 'use gemini'/'hand off to gemini' or a … | [source](https://github.com/claude-world/director-mode-lite/tree/9d0c333/skills/handoff-gemini) |
+
+## Source: davila7/claude-code-templates
+
+- Repository: [https://github.com/davila7/claude-code-templates](https://github.com/davila7/claude-code-templates) (commit `fa79251`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `scientific-critical-thinking` | core | Evaluate research rigor. Assess methodology, experimental design, statistical validity, biases, confounding, evidence quality (GRADE, Cochrane ROB), for critical analysis of scientific claims. | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/scientific-critical-thinking) |
+| `latex-posters` | core | Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/latex-posters) |
+| `market-research-reports` | core | Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics and generate-image, … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/market-research-reports) |
+| `research-engineer` | core | An uncompromising Academic Research Engineer. Operates with absolute scientific rigor, objective criticism, and zero flair. Focuses on theoretical correctness, formal verification, and optimal implementation across any required technology. | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/ai-research/research-engineer) |
+| `venue-templates` | core | Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publication venues (Nature, Science, PLOS, IEEE, ACM), academic conferences (NeurIPS, ICML, CVPR, CHI), research posters, and … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/venue-templates) |
+| `denario` | core | Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/denario) |
+| `scientific-writing` | core | Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process: (1) create section outlines with key points using research-lookup, (2) convert to flowing … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/scientific-writing) |
+| `scientific-brainstorming` | core | Research ideation partner. Generate hypotheses, explore interdisciplinary connections, challenge assumptions, develop methodologies, identify research gaps, for creative scientific problem-solving. | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/scientific-brainstorming) |
+| `scientific-slides` | core | Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/scientific-slides) |
+| `literature-review` | core | Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/literature-review) |
+| `biomni` | core | Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/biomni) |
+| `citation-management` | core | Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/citation-management) |
+
+## Source: fcakyon/claude-codex-settings
+
+- Repository: [https://github.com/fcakyon/claude-codex-settings](https://github.com/fcakyon/claude-codex-settings) (commit `44b7c00`, retrieved 2026-07-14)
+- License: Apache-2.0
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `paper-search-usage` | core | This skill should be used when user asks to "search for papers", "find research papers", "search arXiv", "search PubMed", "find academic papers", "search IEEE", "search Scopus", or "look up scientific literature". | [source](https://github.com/fcakyon/claude-codex-settings/tree/44b7c00/plugins/paper-search-tools/skills/paper-search-usage) |
+
+## Source: ferdinandobons/startup-skill
+
+- Repository: [https://github.com/ferdinandobons/startup-skill](https://github.com/ferdinandobons/startup-skill) (commit `a5f97c3`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `startup-design` | core | Design, validate, and plan a startup from scratch. Covers market research, competitive analysis, business model, brand identity, product definition, financial projections, and validation experiments. Trigger when the user has a startup … | [source](https://github.com/ferdinandobons/startup-skill/tree/a5f97c3/startup-design) |
+
+## Source: foryourhealth111-pixel/Vibe-Skills
+
+- Repository: [https://github.com/foryourhealth111-pixel/Vibe-Skills](https://github.com/foryourhealth111-pixel/Vibe-Skills) (commit `34429a8`, retrieved 2026-07-14)
+- License: Apache-2.0
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `scientific-reporting` | core | Write research/technical reports with strong structure + figure standards. Supports Markdown/HTML/PDF outputs (Quarto optional), executive summary, methods, results, discussion, and reproducibility appendix. | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/scientific-reporting) |
+| `scientific-brainstorming` | core | Open-ended scientific ideation partner. Use for research gaps, mechanism exploration, interdisciplinary connections, assumptions, possible research directions, and lightweight literature matrix or A+B paper-combination idea mapping. For … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/scientific-brainstorming) |
+| `denario` | core | Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/denario) |
+| `scientific-slides` | core | Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/scientific-slides) |
+| `slides-as-code` | core | Build research slides with text-first source (Slidev/Marp/Reveal/Quarto) and reproducible export (PDF). Includes structure, figure reuse rules, and quality checklist for top-tier scientific presentations. | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/slides-as-code) |
+| `scholar-evaluation` | core | Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across research quality dimensions including problem formulation, methodology, analysis, and writing with quantitative scoring and … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/scholar-evaluation) |
+| `literature-review` | core | Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/literature-review) |
+| `openalex-database` | core | Query and analyze scholarly literature using the OpenAlex database. This skill should be used when searching for academic papers, analyzing research trends, finding works by authors or institutions, tracking citations, discovering open … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/openalex-database) |
+| `citation-management` | core | Comprehensive citation management for academic research. Resolve bibliographic identifiers, extract accurate metadata, validate citations, deduplicate references, and generate properly formatted BibTeX entries. This skill should be used … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/citation-management) |
+| `statistical-analysis` | core | Statistical analysis toolkit. Hypothesis tests (t-test, ANOVA, chi-square), regression, correlation, Bayesian stats, power analysis, assumption checks, APA reporting, for academic research. | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/statistical-analysis) |
+| `scientific-critical-thinking` | core | Evaluate scientific claims and evidence quality. Use for assessing experimental design validity, identifying biases and confounders, applying evidence grading frameworks (GRADE, Cochrane Risk of Bias), or teaching critical analysis. Best … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/scientific-critical-thinking) |
+| `exploratory-data-analysis` | core | Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/exploratory-data-analysis) |
+
+## Source: K-Dense-AI/claude-scientific-skills
+
+- Repository: [https://github.com/K-Dense-AI/claude-scientific-skills](https://github.com/K-Dense-AI/claude-scientific-skills) (commit `4d97e29`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `latex-posters` | core | Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/latex-posters) |
+| `market-research-reports` | core | Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics and generate-image, … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/market-research-reports) |
+| `research-lookup` | core | Look up current research and scientific information across three backends: fast web search via parallel-cli (default), the Parallel Chat API for deep multi-source synthesis, and Perplexity sonar-pro-search for scholarly paper searches. … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/research-lookup) |
+| `venue-templates` | core | Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publication venues (Nature, Science, PLOS, IEEE, ACM), academic conferences (NeurIPS, ICML, CVPR, CHI), research posters, and … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/venue-templates) |
+| `scientific-brainstorming` | core | Creative research ideation and exploration. Use for open-ended brainstorming sessions, exploring interdisciplinary connections, challenging assumptions, or identifying research gaps. Best for early-stage research planning when you do not … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/scientific-brainstorming) |
+| `scientific-writing` | core | Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with (1) section outlines with key points using research-lookup then (2) convert to flowing … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/scientific-writing) |
+| `autoskill` | core | Observe the user's screen via screenpipe, detect repeated research workflows, match them against existing scientific-agent-skills, and draft new skills (or composition recipes that chain existing ones) for the patterns not yet covered. Use … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/autoskill) |
+| `exa-search` | core | Web toolkit powered by Exa, tuned for scientific and technical content. Use this skill when the user needs to search the web or fetch/extract URL content. Covers: web search (semantic lookups, research, current info — with optional … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/exa-search) |
+| `scientific-slides` | core | Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/scientific-slides) |
+| `scholar-evaluation` | core | Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across research quality dimensions including problem formulation, methodology, analysis, and writing with quantitative scoring and … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/scholar-evaluation) |
+| `literature-review` | core | Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/literature-review) |
+| `citation-management` | core | Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/citation-management) |
+
+## Source: K-Dense-AI/scientific-agent-skills
+
+- Repository: [https://github.com/K-Dense-AI/scientific-agent-skills](https://github.com/K-Dense-AI/scientific-agent-skills) (commit `4d97e29`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `latex-posters` | core | Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/latex-posters) |
+| `market-research-reports` | core | Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics and generate-image, … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/market-research-reports) |
+| `research-lookup` | core | Look up current research and scientific information across three backends: fast web search via parallel-cli (default), the Parallel Chat API for deep multi-source synthesis, and Perplexity sonar-pro-search for scholarly paper searches. … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/research-lookup) |
+| `venue-templates` | core | Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publication venues (Nature, Science, PLOS, IEEE, ACM), academic conferences (NeurIPS, ICML, CVPR, CHI), research posters, and … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/venue-templates) |
+| `scientific-brainstorming` | core | Creative research ideation and exploration. Use for open-ended brainstorming sessions, exploring interdisciplinary connections, challenging assumptions, or identifying research gaps. Best for early-stage research planning when you do not … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/scientific-brainstorming) |
+| `scientific-writing` | core | Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with (1) section outlines with key points using research-lookup then (2) convert to flowing … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/scientific-writing) |
+| `autoskill` | core | Observe the user's screen via screenpipe, detect repeated research workflows, match them against existing scientific-agent-skills, and draft new skills (or composition recipes that chain existing ones) for the patterns not yet covered. Use … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/autoskill) |
+| `exa-search` | core | Web toolkit powered by Exa, tuned for scientific and technical content. Use this skill when the user needs to search the web or fetch/extract URL content. Covers: web search (semantic lookups, research, current info — with optional … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/exa-search) |
+| `scientific-slides` | core | Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/scientific-slides) |
+| `scholar-evaluation` | core | Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across research quality dimensions including problem formulation, methodology, analysis, and writing with quantitative scoring and … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/scholar-evaluation) |
+| `literature-review` | core | Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/literature-review) |
+| `citation-management` | core | Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/citation-management) |
+
+## Source: makenotion/claude-code-notion-plugin
+
+- Repository: [https://github.com/makenotion/claude-code-notion-plugin](https://github.com/makenotion/claude-code-notion-plugin) (commit `9847f2a`, retrieved 2026-07-14)
+- License: no explicit license — referenced by link only
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `notion-research-documentation` | core | Searches across your Notion workspace, synthesizes findings from multiple pages, and creates comprehensive research documentation saved as new Notion pages. Turns scattered information into structured reports with proper citations and … | [source](https://github.com/makenotion/claude-code-notion-plugin/tree/9847f2a/skills/notion/research-documentation) |
+
+## Source: mohitagw15856/pm-claude-skills
+
+- Repository: [https://github.com/mohitagw15856/pm-claude-skills](https://github.com/mohitagw15856/pm-claude-skills) (commit `876fa30`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `research-protocol` | core | Write a structured research protocol or study design document. Use when asked to write a research protocol, study protocol, research plan, methodology section, or research proposal. Produces a complete protocol with objectives, … | [source](https://github.com/mohitagw15856/pm-claude-skills/tree/876fa30/plugins/pm-research/skills/research-protocol) |
+
+## Source: nexu-io/open-design
+
+- Repository: [https://github.com/nexu-io/open-design](https://github.com/nexu-io/open-design) (commit `4b66023`, retrieved 2026-07-14)
+- License: Apache-2.0
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `html-ppt-zhangzara-monochrome` | core | A grant proposal on CRISPR base-editing for sickle-cell disease — the hypothesis, the approach, the milestones, and the risk. Built as a decision-grade academic research deck for grant review committee. | [source](https://github.com/nexu-io/open-design/tree/4b66023/design-templates/html-ppt-zhangzara-monochrome) |
+| `kami-deck` | core | A lab-meeting deck on gut-microbiome links to sleep quality — the design, the results, the caveats, and the next experiment. Built as a decision-grade academic research deck for lab group, PI. | [source](https://github.com/nexu-io/open-design/tree/4b66023/design-templates/kami-deck) |
+
+## Source: open-gitagent/opengap
+
+- Repository: [https://github.com/open-gitagent/opengap](https://github.com/open-gitagent/opengap) (commit `d7a8e2e`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `research` | core | Researches a topic by breaking it into subtopics, gathering factual information with reasoning, and producing a structured summary with key findings and open questions. Use when the user asks to research, investigate, look up, summarize a … | [source](https://github.com/open-gitagent/opengap/tree/d7a8e2e/examples/lyzr-agent/skills/research) |
+
+## Source: OpenRaiser/NanoResearch
+
+- Repository: [https://github.com/OpenRaiser/NanoResearch](https://github.com/OpenRaiser/NanoResearch) (commit `7144364`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `academic-plotting` | core | Generates publication-quality figures for ML papers from research context. Given a paper section or description, extracts system components and relationships to generate architecture diagrams via Gemini. Given experiment results or data, … | [source](https://github.com/OpenRaiser/NanoResearch/tree/7144364/skills/vendor-ai-research/academic-plotting) |
+
+## Source: Orchestra-Research/AI-research-SKILLs
+
+- Repository: [https://github.com/Orchestra-Research/AI-research-SKILLs](https://github.com/Orchestra-Research/AI-research-SKILLs) (commit `773a529`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `academic-plotting` | core | Generates publication-quality figures for ML papers from research context. Given a paper section or description, extracts system components and relationships to generate architecture diagrams via Gemini. Given experiment results or data, … | [source](https://github.com/Orchestra-Research/AI-research-SKILLs/tree/773a529/20-ml-paper-writing/academic-plotting) |
+
+## Source: sanjay3290/ai-skills
+
+- Repository: [https://github.com/sanjay3290/ai-skills](https://github.com/sanjay3290/ai-skills) (commit `3619692`, retrieved 2026-07-14)
+- License: Apache-2.0
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `deep-research` | core | Execute autonomous multi-step research using Google Gemini Deep Research Agent. Use for: market analysis, competitive landscaping, literature reviews, technical research, due diligence. Takes 2-10 minutes but produces detailed, cited … | [source](https://github.com/sanjay3290/ai-skills/tree/3619692/skills/deep-research) |
+
+## Source: wanshuiyin/Auto-claude-code-research-in-sleep
+
+- Repository: [https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep](https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep) (commit `eb5c9d7`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `research-lit` | core | Search and analyze research papers, find related work, summarize key ideas. Use when user says "find papers", "related work", "literature review", "what does this paper say", or needs to understand academic papers. | [source](https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep/tree/eb5c9d7/skills/research-lit) |
+| `research-wiki` | core | Persistent research knowledge base that accumulates papers, ideas, experiments, claims, and their relationships across the entire research lifecycle. Inspired by Karpathy's LLM Wiki pattern. Use when user says \"知识库\", \"research wiki\", … | [source](https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep/tree/eb5c9d7/skills/research-wiki) |
+
+## Source: zebbern/claude-code-guide
+
+- Repository: [https://github.com/zebbern/claude-code-guide](https://github.com/zebbern/claude-code-guide) (commit `d2c5280`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `vc-industry-research` | core | Generate professional primary market / venture capital industry research reports, including sector deep-dives, investment memos, and market analysis. Produces detailed PDF reports covering TMT, consumer, healthcare, and industrials. … | [source](https://github.com/zebbern/claude-code-guide/tree/d2c5280/skills/vc-industry-research) |
+
+## Source: zechenzhangAGI/AI-research-SKILLs
+
+- Repository: [https://github.com/zechenzhangAGI/AI-research-SKILLs](https://github.com/zechenzhangAGI/AI-research-SKILLs) (commit `773a529`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `academic-plotting` | core | Generates publication-quality figures for ML papers from research context. Given a paper section or description, extracts system components and relationships to generate architecture diagrams via Gemini. Given experiment results or data, … | [source](https://github.com/zechenzhangAGI/AI-research-SKILLs/tree/773a529/20-ml-paper-writing/academic-plotting) |
--- a/references/market.md
+++ b/references/market.md
@@ -0,0 +1,116 @@
+# Market evidence report — biologist
+
+Source: **30 real job ads** (JSearch API, countries: us 30), extracted into the MSSQL evidence store; as of 2026-07-09.
+This report contains extracted, aggregated facts only — no ad text is
+reproduced (copyright / platform terms).
+
+## Seniority distribution
+
+| Seniority | Ads | Share |
+|---|---|---|
+| mid | 19 | 63 % |
+| senior | 6 | 20 % |
+| junior | 3 | 10 % |
+| lead | 1 | 3 % |
+| n/a | 1 | 3 % |
+
+## Tools — full market ranking
+
+| # | Item | Ads | Share |
+|---|---|---|---|
+| 1 | Microsoft Office | 3 | 10 % |
+
+## Hard skills — full market ranking
+
+| # | Item | Ads | Share |
+|---|---|---|---|
+| 1 | data analysis | 12 | 40 % |
+| 2 | data collection | 6 | 20 % |
+| 3 | habitat assessment | 6 | 20 % |
+| 4 | ecological assessment | 3 | 10 % |
+| 5 | immunohistochemistry | 3 | 10 % |
+| 6 | sample preparation | 3 | 10 % |
+
+## Methods — full market ranking
+
+| # | Item | Ads | Share |
+|---|---|---|---|
+
+## Responsibilities — full market ranking
+
+| # | Item | Ads | Share |
+|---|---|---|---|
+| 1 | equipment maintenance | 4 | 13 % |
+| 2 | client communication | 3 | 10 % |
+| 3 | data analysis | 3 | 10 % |
+| 4 | junior staff mentoring | 3 | 10 % |
+| 5 | project delivery | 3 | 10 % |
+| 6 | record maintenance | 3 | 10 % |
+
+## Regional breakdown
+
+> **Corpus note:** 30 relevant ads in total — below the 100-ad target for a fully reliable ranking. Percentages above should be read as indicative.
+
+### US (us)
+
+30 ads.
+
+**Top hard skills:**
+
+- data analysis — 40 % (12 ads)
+- data collection — 20 % (6 ads)
+- habitat assessment — 20 % (6 ads)
+- ecological assessment — 10 % (3 ads)
+- immunohistochemistry — 10 % (3 ads)
+- sample preparation — 10 % (3 ads)
+- aseptic technique — 7 % (2 ads)
+- bacterial culture — 7 % (2 ads)
+- cell culture — 7 % (2 ads)
+- consultancy services — 7 % (2 ads)
+
+**Top tools:**
+
+- Microsoft Office — 10 % (3 ads)
+
+**Seniority:** mid 63 % · senior 20 % · junior 10 % · lead 3 % · n/a 3 %
+
+### UK (gb)
+
+**Insufficient evidence** — 0 ads (minimum for a regional ranking: 30). No ranking is reported for this region.
+
+### EU/DACH (de, at, ch, nl)
+
+**Insufficient evidence** — 0 ads (minimum for a regional ranking: 30). No ranking is reported for this region.
+
+
+## Job title variants in the market
+
+| Title | Ads |
+|---|---|
+| Animal Biologist | 1 |
+| Bergstrom Award | 1 |
+| Biologist | 1 |
+| Biologist - Entry Level | 1 |
+| Biologist (Electron Microscopy) | 1 |
+| Biologist All Source Analyst, Senior | 1 |
+| Biologist I | 1 |
+| Biologist II | 1 |
+| Biologist Remote | 1 |
+| Biology Scientist | 1 |
+| Computational Biologist | 1 |
+| F&W-2026-10 Principal Biologist - Education | 1 |
+| Field Biologist | 1 |
+| Field Biologist (Field Based) | 1 |
+| Field Ornithologist/Naturalist | 1 |
+| Fish and Wildlife Biologist at U.S. Fish and Wildlife Service Davis, WV | 1 |
+| Fish Biologist | 1 |
+| In Vivo Biologist | 1 |
+| Lead Biologist | 1 |
+| Molecular Biologist - Fully Remote | Upto $70/hr | 1 |
+| On-Call Senior Bat Biologist | 1 |
+| Radar Ornithologists | 1 |
+| Scientist II, Biology | 1 |
+| Senior Ornithologist - Lead Bird Surveys & Ecology Projects | 1 |
+| Senior/Principal/Associate Ornithologist | 1 |
+
+Methodology: entities extracted per ad ({hard_skills, tools, methods, responsibilities, seniority}), normalized, counted as DISTINCT ads per entity; report threshold ≥ 3 ads. Headline sections in skills.md/tools.md use the stricter ≥ 20 % threshold.
--- a/references/profile.md
+++ b/references/profile.md
@@ -0,0 +1,31 @@
+# Occupation profile — biologist
+
+- **ESCO URI:** http://data.europa.eu/esco/occupation/eee68e13-8248-43bb-a9fb-959832a6c217
+- **ESCO code:** 2131.4
+- **ISCO-08 group:** 2131 — Biologists, botanists, zoologists and related professionals
+- **O*NET-SOC:** 19-1029.04 — Biologists (match: exactMatch)
+
+## Description (ESCO)
+
+Biologists study living organisms and life in its broader extent in combination with its environment. Through research, they strive to explain the functional mechanisms, interactions, and evolution of organisms.
+
+## Definition
+
+nan
+
+## Alternative labels
+
+- ornithologist
+- herpetologist
+- mycologist
+- zoologist
+- entomologist
+- natural science taxonomist
+- plant pathologist
+- biology research scientist
+- wildlife biologist
+- mammalogist
+- biology science researcher
+- biology biotechnologist
+- lepidopterist
+- ichthyologist
--- a/references/skills.md
+++ b/references/skills.md
@@ -0,0 +1,121 @@
+# Competences — biologist
+
+Source: ESCO v1.2.1 occupation-skill relations (http://data.europa.eu/esco/occupation/eee68e13-8248-43bb-a9fb-959832a6c217).
+
+## Essential
+
+- **apply for research funding** (skill/competence)
+- **apply research ethics and scientific integrity principles in research activities** (skill/competence)
+- **apply scientific methods** (skill/competence)
+- **biology** (knowledge)
+- **botany** (knowledge)
+- **collect biological data** (skill/competence)
+- **communicate with a non-scientific audience** (skill/competence)
+- **conduct research across disciplines** (skill/competence)
+- **conduct research on fauna** (skill/competence)
+- **conduct research on flora** (skill/competence)
+- **demonstrate disciplinary expertise** (skill/competence)
+- **develop professional network with researchers and scientists** (skill/competence)
+- **disseminate results to the scientific community** (skill/competence)
+- **draft scientific or academic papers and technical documentation** (skill/competence)
+- **ecosystem management** (knowledge)
+- **evaluate research activities** (skill/competence)
+- **gather experimental data** (skill/competence)
+- **increase the impact of science on policy and society** (skill/competence)
+- **interact professionally in research and professional environments** (skill/competence)
+- **laboratory techniques** (knowledge)
+- **life sciences** (knowledge)
+- **manage open publications** (skill/competence)
+- **manage personal professional development** (skill/competence)
+- **manage research data** (skill/competence)
+- **microbiology-bacteriology** (knowledge)
+- **molecular biology** (knowledge)
+- **perform project management** (skill/competence)
+- **perform scientific research** (skill/competence)
+- **promote open innovation in research** (skill/competence)
+- **promote the participation of citizens in scientific and research activities** (skill/competence)
+- **promote the transfer of knowledge** (skill/competence)
+- **publish academic research** (skill/competence)
+- **scientific literature** (knowledge)
+- **scientific research methodology** (knowledge)
+- **send samples to laboratory** (skill/competence)
+- **synthesise information** (skill/competence)
+- **virology** (knowledge)
+- **write scientific publications** (skill/competence)
+
+## Optional
+
+- analyse blood samples (skill/competence)
+- analyse cell cultures (skill/competence)
+- animal welfare legislation (knowledge)
+- applied zoology (knowledge)
+- aquatic species (knowledge)
+- archive scientific documentation (skill/competence)
+- assess environmental impact in aquaculture operations (skill/competence)
+- biological chemistry (knowledge)
+- biosecurity (knowledge)
+- biotechnology in aquaculture (knowledge)
+- chemistry (knowledge)
+- collect fish samples for diagnosis (skill/competence)
+- collect samples for analysis (skill/competence)
+- communicate by telephone (skill/competence)
+- computational biology (knowledge)
+- conduct ecological research (skill/competence)
+- conduct fish mortality studies (skill/competence)
+- conduct fish populations studies (skill/competence)
+- conduct genome research (skill/competence)
+- conserve natural resources (skill/competence)
+- create natural science taxonomies (skill/competence)
+- cryopreservation (knowledge)
+- develop aquaculture breeding strategies (skill/competence)
+- develop scientific research protocols (skill/competence)
+- ecology (knowledge)
+- entomology (knowledge)
+- fish anatomy (knowledge)
+- fish biology (knowledge)
+- fish identification and classification (knowledge)
+- genomics (knowledge)
+- habitat restoration (knowledge)
+- herpetology (knowledge)
+- identify poisons (skill/competence)
+- inspect fish stock (skill/competence)
+- lepidoptery (knowledge)
+- mammalogy (knowledge)
+- marine biology (knowledge)
+- medical parasitology (knowledge)
+- monitor fish health status (skill/competence)
+- mycology (knowledge)
+- oceanography (knowledge)
+- ornithology (knowledge)
+- pathology (knowledge)
+- perform field research (skill/competence)
+- perform laboratory tests (skill/competence)
+- pharmacology (knowledge)
+- proteomics (knowledge)
+- provide on-site training in aquaculture facilities (skill/competence)
+- provide technical expertise (skill/competence)
+- quality assurance methodologies (knowledge)
+- reforestation (knowledge)
+- report analysis results (skill/competence)
+- screen live fish deformities (skill/competence)
+- seek innovation in current practices (skill/competence)
+- stem cells (knowledge)
+- synthetic biology (knowledge)
+- toxicology (knowledge)
+- write research proposals (skill/competence)
+- write routine reports (skill/competence)
+- write work-related reports (skill/competence)
+
+<!-- market-evidence -->
+
+## Market evidence (job-ad analysis, 30 ads, as of 2026-07-09)
+
+Share of analyzed job ads mentioning the item (threshold ≥ 20 %). Source: JSearch/Adzuna APIs.
+
+### Hard skills
+
+- data analysis — **40 %**
+- data collection — **20 %**
+- habitat assessment — **20 %**
+
+<!-- market-evidence -->
--- a/references/tasks.md
+++ b/references/tasks.md
@@ -0,0 +1,58 @@
+# Tasks & work activities — biologist
+
+Source: O*NET 30.3, occupation 19-1029.04 (Biologists).
+
+## Task statements
+
+- **[Core]** Develop and maintain liaisons and effective working relations with groups and individuals, agencies, and the public to encourage cooperative management strategies or to develop information and interpret findings.
+- **[Core]** Program and use computers to store, process, and analyze data.
+- **[Core]** Collect and analyze biological data about relationships among and between organisms and their environment.
+- **[Core]** Communicate test results to state and federal representatives and general public.
+- **[Core]** Identify, classify, and study structure, behavior, ecology, physiology, nutrition, culture, and distribution of plant and animal species.
+- **[Core]** Represent employer in a technical capacity at conferences.
+- **[Core]** Teach or supervise students and perform research at universities and colleges.
+- **[Core]** Supervise biological technicians and technologists and other scientists.
+- **[Core]** Prepare technical and research reports, such as environmental impact reports, and communicate the results to individuals in industry, government, or the general public.
+- **[Core]** Review reports and proposals, such as those relating to land use classifications and recreational development, for accuracy, adequacy, or adherence to policies, regulations, or scientific standards.
+- **[Core]** Study basic principles of plant and animal life, such as origin, relationship, development, anatomy, and function.
+- **[Core]** Prepare requests for proposals or statements of work.
+- **[Core]** Write grant proposals to obtain funding for biological research.
+- **[Supplemental]** Study aquatic plants and animals and environmental conditions affecting them, such as radioactivity or pollution.
+- **[Supplemental]** Plan and administer biological research programs for government, research firms, medical industries, or manufacturing firms.
+- **[Supplemental]** Research environmental effects of present and potential uses of land and water areas, determining methods of improving environmental conditions or such outputs as crop yields.
+- **[Supplemental]** Measure salinity, acidity, light, oxygen content, and other physical conditions of water to determine their relationship to aquatic life.
+- **[Supplemental]** Study and manage wild animal populations.
+- **[Supplemental]** Prepare plans for management of renewable resources.
+- **[Supplemental]** Develop methods and apparatus for securing representative plant, animal, aquatic, or soil samples.
+- **[Supplemental]** Study reactions of plants, animals, and marine species to parasites.
+- **[Supplemental]** Develop pest management and control measures, and conduct risk assessments related to pest exclusion, using scientific methods.
+
+## Detailed work activities
+
+- Analyze chemical compounds or substances.
+- Analyze data to identify trends or relationships among variables.
+- Classify organisms based on their characteristics or behavior.
+- Collect environmental data or samples.
+- Communicate results of environmental research.
+- Communicate with government agencies.
+- Conduct research of processes in natural or industrial ecosystems.
+- Develop biological research methods.
+- Develop collaborative relationships between departments or with external organizations.
+- Develop plans to manage natural or renewable resources.
+- Develop safety standards, policies, or procedures.
+- Examine characteristics or behavior of living organisms.
+- Identify environmental concerns.
+- Instruct college students in physical or life sciences.
+- Operate computers or computerized equipment.
+- Plan biological research.
+- Prepare proposal documents or grant applications.
+- Prepare research or technical reports on environmental issues.
+- Prepare scientific or technical reports or presentations.
+- Provide technical information or assistance to public.
+- Research diseases or parasites.
+- Research environmental impact of industrial or development activities.
+- Research topics in area of expertise.
+- Review plans or proposals for environmental conservation.
+- Supervise scientific or technical personnel.
+- Write computer programming code.
+- Write grant proposals.
--- a/references/tools.md
+++ b/references/tools.md
@@ -0,0 +1,62 @@
+# Tools & technology — biologist
+
+Source: O*NET 30.3 'Software Skills' for 19-1029.04.
+
+| Software | Category | Hot technology |
+|---|---|---|
+| IBM SPSS Statistics | Analytical or scientific software | yes |
+| The MathWorks MATLAB | Analytical or scientific software | yes |
+| Microsoft Access | Data base user interface and query software | yes |
+| Structured query language SQL | Data base user interface and query software | yes |
+| ESRI ArcGIS software | Geographic information system | yes |
+| Adobe Photoshop | Graphics or photo imaging software | yes |
+| C++ | Object or component oriented development software | yes |
+| Oracle Java | Object or component oriented development software | yes |
+| Perl | Object or component oriented development software | yes |
+| Python | Object or component oriented development software | yes |
+| R | Object or component oriented development software | yes |
+| Microsoft Office software | Office suite software | yes |
+| Linux | Operating system software | yes |
+| UNIX | Operating system software | yes |
+| Microsoft PowerPoint | Presentation software | yes |
+| Microsoft Excel | Spreadsheet software | yes |
+| Microsoft Word | Word processing software | yes |
+| Agilent Technologies GeneSpring GX | Analytical or scientific software |  |
+| Basic Local Alignment Search Tool BLAST | Analytical or scientific software |  |
+| BioKin PlateKi | Analytical or scientific software |  |
+| BLAT | Analytical or scientific software |  |
+| Blue Tractor Software DNADynamo | Analytical or scientific software |  |
+| CUBIC | Analytical or scientific software |  |
+| Deoxyribonucleic acid DNA sequence analysis software | Analytical or scientific software |  |
+| EMBOSS | Analytical or scientific software |  |
+| EnzymeX | Analytical or scientific software |  |
+| Excavator | Analytical or scientific software |  |
+| FASTA | Analytical or scientific software |  |
+| FoldX | Analytical or scientific software |  |
+| Gene Codes Sequencher | Analytical or scientific software |  |
+| Ingenuity Systems Ingenuity Pathways Analysis | Analytical or scientific software |  |
+| JaMBW | Analytical or scientific software |  |
+| Joint Prediction of Operons JPOP | Analytical or scientific software |  |
+| MacVector | Analytical or scientific software |  |
+| Meyer Instruments Optimas | Analytical or scientific software |  |
+| Minitab | Analytical or scientific software |  |
+| NAMD | Analytical or scientific software |  |
+| Partek Incorporated Partek Genomics Suite | Analytical or scientific software |  |
+| Phrap | Analytical or scientific software |  |
+| Phred | Analytical or scientific software |  |
+| Protein Explorer | Analytical or scientific software |  |
+| RepeatMasker | Analytical or scientific software |  |
+| SequentiX TreeMe | Analytical or scientific software |  |
+| sim4 | Analytical or scientific software |  |
+| SoftZymics VisualEnzymics | Analytical or scientific software |  |
+| SURFDriver Software WinSURF | Analytical or scientific software |  |
+| Textco BioSoftware Gene Inspector | Analytical or scientific software |  |
+| The Mathworks SimBiology | Analytical or scientific software |  |
+| VayTek VoxBlast | Analytical or scientific software |  |
+| Visual Molecular Dynamics VMD | Analytical or scientific software |  |
+| Wolfram Research Mathematica | Analytical or scientific software |  |
+| TIBCO Spotfire | Business intelligence and data analysis software |  |
+| National Instruments LabVIEW | Development environment software |  |
+| Software development tools | Development environment software |  |
+| Geographic information system GIS software | Geographic information system |  |
+| Web browser software | Internet browser software |  |