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clinical-informatics-manager/references/ai-skills.md
skillfactor-pipeline fecd958096 feat: clinical-informatics-manager skill package v0.1.0
2026-08-15 12:46:43 +02:00

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External AI agent skills — clinical-informatics-manager

Proven, publicly available AI agent skills mapped to this occupation. Nothing is copied from the sources: every entry is a name, a one-line summary and a link to the upstream skill package. Each section names its source repository, commit, license and retrieval date.

Tiers: core = the skill directly exercises a top market hard skill, tool or method (from gated job-ad evidence) or an essential ESCO competence of this occupation; adjacent = plausibly useful, secondary. Entries are capped at 12 per source and 80 in total per occupation (core first, strongest matches survive); everything beyond the caps is excluded and logged in the pipeline audit trail, not in this package.

Matched deterministically (ISCO group + title/competence keywords, tiered against market evidence + ESCO essentials) by pipeline/p5_enrich_ai_skills.py on 2026-07-14.

Source: anthropics/skills

  • Repository: https://github.com/anthropics/skills (commit f6656c1, retrieved 2026-07-14)
  • License: Apache-2.0; the document skills (docx/pdf/pptx/xlsx) are source-available — see the LICENSE.txt in the upstream skill folder
Skill Tier What it adds Upstream
docx adjacent Use this skill whenever the user wants to create, read, edit, or manipulate Word documents (.docx files) or Word templates (.dotx files). Triggers include: any mention of 'Word doc', 'word document', '.docx', '.dotx', or requests to … source
pdf adjacent Use this skill whenever the user wants to do anything with PDF files. This includes reading or extracting text/tables from PDFs, combining or merging multiple PDFs into one, splitting PDFs apart, rotating pages, adding watermarks, creating … source

Source: wshobson/agents

Skill Tier What it adds Upstream
team-collaboration-dx-optimizer (agent) adjacent Developer Experience specialist. Improves tooling, setup, and workflows. Use PROACTIVELY when setting up new projects, after team feedback, or when development friction is noticed. source

Source: a5c-ai/babysitter

Skill Tier What it adds Upstream
health-data-integration core Facilitate interoperability between health IT systems including EHR, HIE, and clinical decision support through HL7, FHIR, and other healthcare data standards source
clinical-workflow-analysis core Analyze clinical workflows to identify inefficiencies, bottlenecks, and improvement opportunities using Lean healthcare principles and value stream mapping techniques source
population-health-stratification core Stratify patient populations by risk level using claims data, clinical data, and social determinants to prioritize care management interventions source
medical-agent core Build medical AI agents for clinical decision support, medical record summarization, diagnostic assistance, and healthcare workflow automation. source
bioethics-deliberation core Apply bioethical principles (autonomy, beneficence, non-maleficence, justice) and case-based reasoning to healthcare decisions, research protocols, and clinical dilemmas source
clinical-decision-support-rules core Develop and maintain clinical decision support rules including alerts, reminders, order sets, and evidence-based recommendations within EHR systems source
medical-coding-audit core Review clinical documentation and assigned codes for accuracy, compliance, and optimization, identifying documentation improvement opportunities and coding errors source
clinical-study-designer core Clinical study design skill for medical device trials including IDE studies and post-market studies source
clinical-documentation-query core Generate compliant physician queries to clarify clinical documentation for accurate coding, severity of illness, and risk of mortality capture source
clinvar-querier core ClinVar database query skill for clinical variant interpretation and pathogenicity lookup source
vep-variant-annotator core Variant Effect Predictor skill for comprehensive variant annotation with clinical database integration source
accreditation-tracer-simulation core Simulate Joint Commission tracer methodology to assess compliance with accreditation standards across patient care processes and support systems source

Source: affaan-m/everything-claude-code

Skill Tier What it adds Upstream
healthcare-cdss-patterns core Clinical Decision Support System (CDSS) development patterns. Drug interaction checking, dose validation, clinical scoring (NEWS2, qSOFA), alert severity classification, and integration into EMR workflows. source
healthcare-eval-harness core Patient safety evaluation harness for healthcare application deployments. Automated test suites for CDSS accuracy, PHI exposure, clinical workflow integrity, and integration compliance. Blocks deployments on safety failures. source
healthcare-emr-patterns core EMR/EHR development patterns for healthcare applications. Clinical safety, encounter workflows, prescription generation, clinical decision support integration, and accessibility-first UI for medical data entry. source
agentic-os core Build persistent multi-agent operating systems on Claude Code. Covers kernel architecture, specialist agents, slash commands, file-based memory, scheduled automation, and state management without external databases. source

Source: alirezarezvani/claude-skills

Skill Tier What it adds Upstream
research-ops-skills core Use when planning, funding, scoping, or synthesizing enterprise research across workstreams — clinical study design, R&D program finance, market sizing/surveys, or product/user research. Triggers on "design this clinical study", "what … source
mdr-745-specialist core EU MDR 2017/745 compliance specialist for medical device classification, technical documentation, clinical evidence, and post-market surveillance. Covers Annex VIII classification rules, Annex II/III technical files, Annex XIV clinical … source
clinical-research core — source
grants core NIH grant research skill for clinical researchers. Grill-me intake (research idea + career stage + preliminary data + environment + submission posture + known institute targets) locks down the funding strategy before any search runs. Runs … source
capa-officer core CAPA system management for medical device QMS. Covers root cause analysis, corrective action planning, effectiveness verification, and CAPA metrics. Use when running CAPA investigations, 5-Why analysis, fishbone diagrams, root cause … source
quality-documentation-manager core Document control system management for medical device QMS. Covers document numbering, version control, change management, and 21 CFR Part 11 compliance. Use when working on document control procedures, change control workflows, document … source
risk-management-specialist core Medical device risk management specialist implementing ISO 14971 throughout product lifecycle. Provides risk analysis, risk evaluation, risk control, and post-production information analysis. Use when user mentions risk management, ISO … source
quality-manager-qms-iso13485 core ISO 13485 Quality Management System implementation and maintenance for medical device organizations. Provides QMS design, documentation control, internal auditing, CAPA management, and certification support. Use when working with medical … source

Source: brycewang-stanford/Auto-Empirical-Research-Skills

Skill Tier What it adds Upstream
biomedical-skills core 24 biomedical research skills. Trigger: medical research, clinical trials, genomics, bioinformatics. Design: domain databases, wet-lab/dry-lab methods, and ethical compliance guides. source
clinical-research-guide core Design clinical studies and report using CONSORT, STROBE guidelines source
pharma-skills core 6 pharmaceutical research skills. Trigger: drug discovery, pharmacology, clinical trial design, regulatory filing. Design: end-to-end pipeline from target identification to clinical trials. source
lifelines core Complete survival analysis library in Python. Handles right-censored data, Kaplan-Meier curves, and Cox regression. Standard for clinical trial analysis and epidemiology. source
clinical-trial-design-guide core Clinical trial methodology, biostatistics, and study design guidance source
clinicaltrials-api core Clinical trial registry database search API source
medical-data-api core Access FDA drug data and WHO global health statistics for research source

Source: davila7/claude-code-templates

Skill Tier What it adds Upstream
treatment-plans core Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, … source
pyhealth core Comprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data. This skill should be used when working with electronic health records (EHR), clinical prediction tasks (mortality, … source
mdr-745-specialist core EU MDR 2017/745 regulation specialist and consultant for medical device requirement management. Provides comprehensive MDR compliance expertise, gap analysis, technical documentation guidance, clinical evidence requirements, and … source
clinical-decision-support core Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based … source
biomni core Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR … source
clinical-reports core Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full … source
clinicaltrials-database core Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical research and patient matching. source
quality-manager-qms-iso13485 core ISO 13485 Quality Management System specialist for medical device companies. Provides QMS implementation, maintenance, process optimization, and compliance expertise. Use for QMS design, documentation control, management review, internal … source
clinvar-database core Query NCBI ClinVar for variant clinical significance. Search by gene/position, interpret pathogenicity classifications, access via E-utilities API or FTP, annotate VCFs, for genomic medicine. source
risk-management-specialist core Senior Risk Management specialist for medical device companies implementing ISO 14971 risk management throughout product lifecycle. Provides risk analysis, risk evaluation, risk control, and post-production information analysis. Use for … source

Source: foryourhealth111-pixel/Vibe-Skills

Skill Tier What it adds Upstream
treatment-plans core Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, … source
pyhealth core Comprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data. This skill should be used when working with electronic health records (EHR), clinical prediction tasks (mortality, … source
clinical-decision-support core Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based … source
clinical-reports core Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full … source
clinicaltrials-database core Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical research and patient matching. source
bio-database-evidence core Unified biological database evidence owner. Use for gene annotation, variant clinical significance, cancer mutation evidence, GWAS trait associations, pathway mapping, target-disease evidence, protein structures, protein interaction … source
iso-13485-certification core Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Systems. Use when users need help with ISO 13485 QMS documentation, including (1) conducting gap analysis of existing … source

Source: jeremylongshore/claude-code-plugins-plus-skills

Skill Tier What it adds Upstream
abridge-deploy-integration core Deploy Abridge clinical AI integration to HIPAA-compliant cloud infrastructure. Use when deploying to GCP Cloud Run, AWS ECS, or Azure Container Apps with healthcare-grade secrets management and compliance controls. Trigger: "deploy … source
abridge-reference-architecture core Implement Abridge reference architecture for clinical AI integration. Use when designing a new Abridge deployment, reviewing project structure, or planning multi-site health system rollouts with EHR integration. Trigger: "abridge … source
abridge-cost-tuning core Optimize Abridge clinical AI costs through tier selection, session management, and usage monitoring for healthcare organizations. Use when analyzing Abridge billing, optimizing encounter volume, or right-sizing your Abridge contract for … source
abridge-performance-tuning core Optimize Abridge clinical AI integration performance for high-volume deployments. Use when reducing note generation latency, optimizing audio streaming throughput, improving FHIR push performance, or scaling for multi-site health systems. … source
abridge-sdk-patterns core Apply production-ready patterns for Abridge clinical AI integration. Use when building reusable Abridge client wrappers, implementing HIPAA-compliant error handling, or establishing team coding standards for healthcare AI. Trigger: … source
abridge-ci-integration core Configure CI/CD pipeline for Abridge clinical AI integrations with GitHub Actions. Use when setting up automated testing, FHIR validation, HIPAA compliance checks, or deployment pipelines for healthcare AI applications. Trigger: "abridge … source
abridge-install-auth core Set up Abridge clinical AI platform authentication and EHR integration credentials. Use when onboarding a healthcare org to Abridge, configuring Epic/Athena integration, or setting up developer sandbox access for ambient AI documentation. … source
veeva-core-workflow-a core Veeva Vault core workflow a for REST API and clinical operations. Use when working with Veeva Vault document management and CRM. Trigger: "veeva core workflow a". source
veeva-core-workflow-b core Veeva Vault core workflow b for REST API and clinical operations. Use when working with Veeva Vault document management and CRM. Trigger: "veeva core workflow b". source
abridge-prod-checklist core Execute Abridge production readiness checklist for clinical AI deployment. Use when launching Abridge in a healthcare org, preparing for go-live, or validating HIPAA compliance before production deployment. Trigger: "abridge production … source
veeva-reference-architecture core Veeva Vault reference architecture for REST API and clinical operations. Use when working with Veeva Vault document management and CRM. Trigger: "veeva reference architecture". source
abridge-upgrade-migration core Plan and execute Abridge integration upgrades and EHR migration procedures. Use when upgrading Abridge API versions, migrating between EHR systems, or handling breaking changes in clinical documentation workflows. Trigger: "abridge … source

Source: K-Dense-AI/claude-scientific-skills

Skill Tier What it adds Upstream
treatment-plans core Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, … source
clinical-decision-support core Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based … source
clinical-reports core Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full … source
iso-13485-certification core Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Systems. Use when users need help with ISO 13485 QMS documentation, including (1) conducting gap analysis of existing … source

Source: K-Dense-AI/scientific-agent-skills

Skill Tier What it adds Upstream
treatment-plans core Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, … source
clinical-decision-support core Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based … source
clinical-reports core Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full … source
iso-13485-certification core Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Systems. Use when users need help with ISO 13485 QMS documentation, including (1) conducting gap analysis of existing … source

Source: mohitagw15856/pm-claude-skills

Skill Tier What it adds Upstream
patient-communication core Write clear, plain-English patient communications for any healthcare context. Use when asked to write a patient letter, patient information leaflet, appointment letter, test-results letter, discharge summary for patients, or health … source
soap-note core Structure a clinical encounter into a clean SOAP note. Use when asked to write a SOAP note, document a patient encounter, turn visit notes into clinical documentation, or structure subjective/objective/assessment/plan. Produces a … source
clinical-trial-protocol core Draft a clinical trial protocol synopsis with the elements regulators and IRBs expect. Use when asked to write a clinical trial protocol, a study protocol synopsis, a trial design, or to structure endpoints/eligibility/statistics for an … source

Source: mvanhorn/last30days-skill

Skill Tier What it adds Upstream
last30days core Research what people actually say about any topic in the last 30 days. Pulls posts and engagement from Reddit, X, YouTube, TikTok, Hacker News, Polymarket, GitHub, and the web. Includes a doctor health check to diagnose broken or missing … source

Source: nexu-io/open-design

Skill Tier What it adds Upstream
clinical-case-report core Structured medical case presentation for clinical rounds, conferences, and documentation. Generates SOAP-format or narrative case reports with physiologically accurate vitals, labs, and evidence-based plans. Use when the brief mentions … source
html-ppt-testing-safety-alert core A hospital data-governance briefing: patient-data risk, the control framework, accountability, and the approval the board must give. Built as a decision-grade policy briefing deck for health-system board, regulators. source

Source: ruvnet/claude-code-flow

Skill Tier What it adds Upstream
AgentDB Memory Patterns core Implement persistent memory patterns for AI agents using AgentDB. Includes session memory, long-term storage, pattern learning, and context management. Use when building stateful agents, chat systems, or intelligent assistants. source

Source: Sushegaad/Claude-Skills-Governance-Risk-and-Compliance

Skill Tier What it adds Upstream
hipaa-compliance core Expert HIPAA compliance assistant for healthcare and software contexts. Use this skill whenever the user mentions HIPAA, PHI (Protected Health Information), ePHI, covered entities, business associates, healthcare data privacy, medical … source

Source: zebbern/claude-code-guide

Skill Tier What it adds Upstream
vc-industry-research core Generate professional primary market / venture capital industry research reports, including sector deep-dives, investment memos, and market analysis. Produces detailed PDF reports covering TMT, consumer, healthcare, and industrials. … source