feat: biomedical-scientist-advanced skill package v0.1.0

2026-08-14 17:07:20 +02:00
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--- a/PROVENANCE.md
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+# Data provenance — biomedical-scientist-advanced
+
+Where the content of this skill package comes from, counted by
+content items (tasks, competences, tools, evidence entries, curated
+knowledge). Rendered live by Gitea:
+
+```mermaid
+%%{init: {'theme':'base','themeVariables':{'pie1':'#f9a825','pie2':'#1e88e5','pie3':'#d97757','pie4':'#8e24aa','pieOuterStrokeWidth':'0px','pieSectionTextColor':'#fff'}}}%%
+pie showData
+    title Content sources — biomedical-scientist-advanced
+    "ESCO (occupation & competences)" : 61
+    "O*NET (tasks & tools)" : 55
+    "Anthropic official Claude skills" : 5
+    "External AI skill packs (mapped)" : 162
+```
+
+| Source | Items | Share | Files |
+|---|---|---|---|
+| ESCO (occupation & competences) | 61 | 21.6 % | references/profile.md, references/skills.md |
+| O*NET (tasks & tools) | 55 | 19.4 % | references/tasks.md, references/tools.md |
+| Job boards (market evidence) | 0 | 0.0 % | references/market.md (full report) + "Market evidence" headline sections |
+| Wikipedia & AI expert curation | 0 | 0.0 % | glossary, literature, usecases, intake, quality, evals/ |
+| Anthropic official Claude skills | 5 | 1.8 % | references/ai-skills.md, section "anthropics/skills" (official Claude Code skills) |
+| External AI skill packs (mapped) | 162 | 57.2 % | references/ai-skills.md (per-source attribution inside) |
+| Stack Exchange practitioner Q&A (CC-BY-SA) | 0 | 0.0 % | references/practitioner-qa.md (per-entry attribution inside) |
+
+Licensing: O*NET (USDOL/ETA, CC BY 4.0) · ESCO (© European Union) ·
+job-ad evidence via official APIs (JSearch/Adzuna) · Wikipedia content
+paraphrased with source URLs — never copied · external AI skills are
+linked, not copied (Apache-2.0/MIT/source-available, see ai-skills.md).
--- a/SKILL.md
+++ b/SKILL.md
@@ -0,0 +1,58 @@
+---
+name: biomedical-scientist-advanced
+description: "Occupational skill for the role 'biomedical scientist advanced' (also: advanced biomedical doctor, advanced biomedical researcher, advanced practitioner in biomedical science, advanced medical laboratory scientist, expert scientist in biomedicine, advanced analyst in biomedical science). Use when the user asks for typical biomedical scientist advanced work such as: Establish or monitor quality assurance programs or activities to ensure the accuracy of laboratory results.; Collect and study blood samples to determine the number of cells, their morphology, or their blood group, blood type, or compatibility for transfusion purposes, using microscopic techniques.; Analyze laboratory findings to check the accuracy of the results."
+---
+
+# Biomedical Scientist Advanced
+
+Biomedical scientists advanced undertake advanced translational research in the biomedical laboratory sciences field and perform as educators of their professions or as other professionals, as well as acting as consultants in the field.
+
+## Core workflow
+
+1. Establish or monitor quality assurance programs or activities to ensure the accuracy of laboratory results.
+2. Collect and study blood samples to determine the number of cells, their morphology, or their blood group, blood type, or compatibility for transfusion purposes, using microscopic techniques.
+3. Analyze laboratory findings to check the accuracy of the results.
+4. Conduct chemical analysis of body fluids, including blood, urine, or spinal fluid, to determine presence of normal or abnormal components.
+5. Operate, calibrate, or maintain equipment used in quantitative or qualitative analysis, such as spectrophotometers, calorimeters, flame photometers, or computer-controlled analyzers.
+6. Enter data from analysis of medical tests or clinical results into computer for storage.
+7. Analyze samples of biological material for chemical content or reaction.
+8. Set up, clean, and maintain laboratory equipment.
+
+## How to use this skill
+
+- Read [references/profile.md](references/profile.md) for the occupation profile and scope.
+- Consult [references/tasks.md](references/tasks.md) for the full task and activity inventory.
+- Check [references/skills.md](references/skills.md) for essential vs. optional competences.
+- Check [references/tools.md](references/tools.md) for the software commonly used in this role.
+- See [references/ai-skills.md](references/ai-skills.md) — matched external AI agent skills (per-source attribution).
+
+## Key competences (essential)
+
+- accept own accountability
+- adhere to organisational guidelines
+- analytical methods in biomedical sciences
+- apply context specific clinical competences
+- apply scientific methods
+- assist in the production of laboratory documentation
+- biomedical science
+- biomedical scientists' role in health care system
+- biomedical techniques
+- biosafety in biomedical laboratory
+- conduct health related research
+- dermapathology
+- health care occupation-specific ethics
+- make clinical decisions
+- neoplasia
+
+## Hot technologies
+
+- eClinicalWorks EHR software
+- MEDITECH software
+- Microsoft Office software
+- Microsoft PowerPoint
+- Microsoft Project
+- Microsoft Excel
+- Microsoft Word
+
+---
+*Sources: ESCO v1.2.1 (http://data.europa.eu/esco/occupation/b7b17a85-ccd0-4d2f-92f2-7e99839731b0), O*NET 30.3 (29-2011.00). See manifest.json for licensing/attribution.*
--- a/manifest.json
+++ b/manifest.json
@@ -0,0 +1,244 @@
+{
+  "name": "biomedical-scientist-advanced",
+  "title": "biomedical scientist advanced",
+  "version": "0.1.0",
+  "layer": "core",
+  "language": "en",
+  "generated": "2026-07-07",
+  "ids": {
+    "esco_uri": "http://data.europa.eu/esco/occupation/b7b17a85-ccd0-4d2f-92f2-7e99839731b0",
+    "esco_code": "2269.14",
+    "isco_group": "2269",
+    "onet_soc": "29-2011.00",
+    "crosswalk_match": "closeMatch"
+  },
+  "sources": [
+    {
+      "name": "ESCO",
+      "version": "1.2.1",
+      "url": "https://esco.ec.europa.eu/"
+    },
+    {
+      "name": "O*NET",
+      "version": "30.3",
+      "url": "https://www.onetcenter.org/",
+      "license": "CC BY 4.0"
+    }
+  ],
+  "attribution": "This package includes information from the O*NET Database (v30.3) by the U.S. Department of Labor, Employment and Training Administration (USDOL/ETA), CC BY 4.0. skillfactor is not endorsed by USDOL/ETA. ESCO data (v1.2.1) (c) European Union, used per the ESCO download conditions: https://esco.ec.europa.eu/en/use-esco/download",
+  "counts": {
+    "tasks": 15,
+    "dwas": 16,
+    "skills_essential": 25,
+    "skills_optional": 35,
+    "software": 23
+  },
+  "enrichment_ai_skills": {
+    "generated": "2026-07-14",
+    "method": "deterministic mapping (ISCO prefix + title/competence keywords)",
+    "sources": {
+      "anthropics/skills": {
+        "repo": "https://github.com/anthropics/skills",
+        "commit": "f6656c1",
+        "license": "Apache-2.0; the document skills (docx/pdf/pptx/xlsx) are source-available \u2014 see the LICENSE.txt in the upstream skill folder",
+        "skills": 2
+      },
+      "brycewang-stanford/Auto-Empirical-Research-Skills": {
+        "repo": "https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills",
+        "commit": "85bf545",
+        "license": "CC-BY-4.0",
+        "skills": 12
+      },
+      "davila7/claude-code-templates": {
+        "repo": "https://github.com/davila7/claude-code-templates",
+        "commit": "fa79251",
+        "license": "MIT",
+        "skills": 12
+      },
+      "affaan-m/everything-claude-code": {
+        "repo": "https://github.com/affaan-m/everything-claude-code",
+        "commit": "ed38744",
+        "license": "MIT",
+        "skills": 2
+      },
+      "K-Dense-AI/claude-scientific-skills": {
+        "repo": "https://github.com/K-Dense-AI/claude-scientific-skills",
+        "commit": "4d97e29",
+        "license": "MIT",
+        "skills": 6
+      },
+      "foryourhealth111-pixel/Vibe-Skills": {
+        "repo": "https://github.com/foryourhealth111-pixel/Vibe-Skills",
+        "commit": "34429a8",
+        "license": "Apache-2.0",
+        "skills": 9
+      },
+      "K-Dense-AI/scientific-agent-skills": {
+        "repo": "https://github.com/K-Dense-AI/scientific-agent-skills",
+        "commit": "4d97e29",
+        "license": "MIT",
+        "skills": 6
+      },
+      "a5c-ai/babysitter": {
+        "repo": "https://github.com/a5c-ai/babysitter",
+        "commit": "44a5d58b",
+        "license": "MIT",
+        "skills": 4
+      },
+      "infrasity-labs/dev-gtm-claude-skills": {
+        "repo": "https://github.com/infrasity-labs/dev-gtm-claude-skills",
+        "commit": "02cfefb",
+        "license": "MIT",
+        "skills": 1
+      },
+      "AgriciDaniel/claude-seo": {
+        "repo": "https://github.com/AgriciDaniel/claude-seo",
+        "commit": "6cf1ea9",
+        "license": "MIT",
+        "skills": 1
+      },
+      "jeremylongshore/claude-code-plugins-plus-skills": {
+        "repo": "https://github.com/jeremylongshore/claude-code-plugins-plus-skills",
+        "commit": "e112938a",
+        "license": "MIT",
+        "skills": 6
+      },
+      "nexu-io/open-design": {
+        "repo": "https://github.com/nexu-io/open-design",
+        "commit": "4b66023",
+        "license": "Apache-2.0",
+        "skills": 1
+      },
+      "mvanhorn/last30days-skill": {
+        "repo": "https://github.com/mvanhorn/last30days-skill",
+        "commit": "4b02791",
+        "license": "MIT",
+        "skills": 1
+      },
+      "ferdinandobons/startup-skill": {
+        "repo": "https://github.com/ferdinandobons/startup-skill",
+        "commit": "a5f97c3",
+        "license": "MIT",
+        "skills": 1
+      },
+      "rampstackco/claude-skills": {
+        "repo": "https://github.com/rampstackco/claude-skills",
+        "commit": "bc6d961",
+        "license": "MIT",
+        "skills": 1
+      },
+      "parcadei/Continuous-Claude-v3": {
+        "repo": "https://github.com/parcadei/Continuous-Claude-v3",
+        "commit": "d07ff4b",
+        "license": "MIT",
+        "skills": 1
+      },
+      "vibeeval/vibecosystem": {
+        "repo": "https://github.com/vibeeval/vibecosystem",
+        "commit": "cea9462",
+        "license": "MIT",
+        "skills": 1
+      },
+      "fcakyon/claude-codex-settings": {
+        "repo": "https://github.com/fcakyon/claude-codex-settings",
+        "commit": "44b7c00",
+        "license": "Apache-2.0",
+        "skills": 1
+      },
+      "bevibing/tutor-skills": {
+        "repo": "https://github.com/bevibing/tutor-skills",
+        "commit": "397110c",
+        "license": "MIT",
+        "skills": 1
+      },
+      "RoundTable02/tutor-skills": {
+        "repo": "https://github.com/RoundTable02/tutor-skills",
+        "commit": "397110c",
+        "license": "MIT",
+        "skills": 1
+      },
+      "mohitagw15856/pm-claude-skills": {
+        "repo": "https://github.com/mohitagw15856/pm-claude-skills",
+        "commit": "876fa30",
+        "license": "MIT",
+        "skills": 2
+      },
+      "wanshuiyin/Auto-claude-code-research-in-sleep": {
+        "repo": "https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep",
+        "commit": "eb5c9d7",
+        "license": "MIT",
+        "skills": 1
+      },
+      "alirezarezvani/claude-skills": {
+        "repo": "https://github.com/alirezarezvani/claude-skills",
+        "commit": "0241f43",
+        "license": "MIT",
+        "skills": 1
+      },
+      "silverstein/minutes": {
+        "repo": "https://github.com/silverstein/minutes",
+        "commit": "3fb2e83",
+        "license": "MIT",
+        "skills": 1
+      },
+      "pedrohcgs/claude-code-my-workflow": {
+        "repo": "https://github.com/pedrohcgs/claude-code-my-workflow",
+        "commit": "be53c12",
+        "license": "MIT",
+        "skills": 1
+      },
+      "OpenRaiser/NanoResearch": {
+        "repo": "https://github.com/OpenRaiser/NanoResearch",
+        "commit": "7144364",
+        "license": "MIT",
+        "skills": 1
+      },
+      "Orchestra-Research/AI-research-SKILLs": {
+        "repo": "https://github.com/Orchestra-Research/AI-research-SKILLs",
+        "commit": "773a529",
+        "license": "MIT",
+        "skills": 1
+      },
+      "zechenzhangAGI/AI-research-SKILLs": {
+        "repo": "https://github.com/zechenzhangAGI/AI-research-SKILLs",
+        "commit": "773a529",
+        "license": "MIT",
+        "skills": 1
+      },
+      "AgriciDaniel/claude-blog": {
+        "repo": "https://github.com/AgriciDaniel/claude-blog",
+        "commit": "49842ea",
+        "license": "MIT",
+        "skills": 1
+      }
+    },
+    "total_skills": 80,
+    "tiers": {
+      "core": 58,
+      "adjacent": 22
+    }
+  },
+  "provenance": {
+    "items": {
+      "esco": 61,
+      "onet": 55,
+      "jobads": 0,
+      "wiki_ai": 0,
+      "anthropic": 5,
+      "ai_skills": 162,
+      "stackx": 0
+    },
+    "share_percent": {
+      "esco": 21.6,
+      "onet": 19.4,
+      "jobads": 0.0,
+      "wiki_ai": 0.0,
+      "anthropic": 1.8,
+      "ai_skills": 57.2,
+      "stackx": 0.0
+    },
+    "method": "content items per source category"
+  },
+  "collar": "white",
+  "computer_work": true
+}
--- a/references/ai-skills.md
+++ b/references/ai-skills.md
@@ -0,0 +1,330 @@
+# External AI agent skills — biomedical-scientist-advanced
+
+Proven, publicly available AI agent skills mapped to this occupation.
+Nothing is copied from the sources: every entry is a name, a one-line
+summary and a link to the upstream skill package. Each section names
+its source repository, commit, license and retrieval date.
+
+**Tiers:** `core` = the skill directly exercises a top market hard
+skill, tool or method (from gated job-ad evidence) or an essential
+ESCO competence of this occupation; `adjacent` =
+plausibly useful, secondary. Entries are capped at 12 per source
+and 80 in total per occupation (core first,
+strongest matches survive); everything beyond the caps is excluded
+and logged in the pipeline audit trail, not in this package.
+
+_Matched deterministically (ISCO group + title/competence keywords,
+tiered against market evidence + ESCO essentials) by
+`pipeline/p5_enrich_ai_skills.py` on 2026-07-14._
+
+## Source: anthropics/skills
+
+- Repository: [https://github.com/anthropics/skills](https://github.com/anthropics/skills) (commit `f6656c1`, retrieved 2026-07-14)
+- License: Apache-2.0; the document skills (docx/pdf/pptx/xlsx) are source-available — see the LICENSE.txt in the upstream skill folder
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `pdf` | adjacent | Use this skill whenever the user wants to do anything with PDF files. This includes reading or extracting text/tables from PDFs, combining or merging multiple PDFs into one, splitting PDFs apart, rotating pages, adding watermarks, creating … | [source](https://github.com/anthropics/skills/tree/main/skills/pdf) |
+| `docx` | adjacent | Use this skill whenever the user wants to create, read, edit, or manipulate Word documents (.docx files) or Word templates (.dotx files). Triggers include: any mention of 'Word doc', 'word document', '.docx', '.dotx', or requests to … | [source](https://github.com/anthropics/skills/tree/main/skills/docx) |
+
+## Source: a5c-ai/babysitter
+
+- Repository: [https://github.com/a5c-ai/babysitter](https://github.com/a5c-ai/babysitter) (commit `44a5d58b`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `population-health-stratification` | core | Stratify patient populations by risk level using claims data, clinical data, and social determinants to prioritize care management interventions | [source](https://github.com/a5c-ai/babysitter/tree/44a5d58b/library/specializations/domains/social-sciences-humanities/healthcare/skills/population-health-stratification) |
+| `bioethics-deliberation` | core | Apply bioethical principles (autonomy, beneficence, non-maleficence, justice) and case-based reasoning to healthcare decisions, research protocols, and clinical dilemmas | [source](https://github.com/a5c-ai/babysitter/tree/44a5d58b/library/specializations/domains/social-sciences-humanities/philosophy/skills/bioethics-deliberation) |
+| `fea-mesh-generator` | adjacent | Finite element mesh generation skill optimized for biomedical geometries including implants, anatomical structures, and tissue models | [source](https://github.com/a5c-ai/babysitter/tree/44a5d58b/library/specializations/domains/science/biomedical-engineering/skills/fea-mesh-generator) |
+| `pubmed-literature-miner` | adjacent | Biomedical literature mining using PubMed/MEDLINE for systematic review support | [source](https://github.com/a5c-ai/babysitter/tree/44a5d58b/library/specializations/domains/science/scientific-discovery/skills/pubmed-literature-miner) |
+
+## Source: affaan-m/everything-claude-code
+
+- Repository: [https://github.com/affaan-m/everything-claude-code](https://github.com/affaan-m/everything-claude-code) (commit `ed38744`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `literature-review` | core | Systematic literature-review workflow for academic, biomedical, technical, and scientific topics, including search planning, source screening, synthesis, citation checks, and evidence logging. | [source](https://github.com/affaan-m/everything-claude-code/tree/ed38744/skills/scientific-thinking-literature-review) |
+| `pubmed-database` | adjacent | Direct PubMed and NCBI E-utilities search workflows for biomedical literature, MeSH queries, PMID lookup, citation retrieval, and API-backed literature monitoring. | [source](https://github.com/affaan-m/everything-claude-code/tree/ed38744/skills/scientific-db-pubmed-database) |
+
+## Source: AgriciDaniel/claude-blog
+
+- Repository: [https://github.com/AgriciDaniel/claude-blog](https://github.com/AgriciDaniel/claude-blog) (commit `49842ea`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `blog-audit` | adjacent | Full-site blog health assessment scanning all blog files for quality scores, orphan pages, topic cannibalization, stale content, and AI citation readiness. Spawns parallel subagents for comprehensive analysis. Produces per-post scores and … | [source](https://github.com/AgriciDaniel/claude-blog/tree/49842ea/skills/blog-audit) |
+
+## Source: AgriciDaniel/claude-seo
+
+- Repository: [https://github.com/AgriciDaniel/claude-seo](https://github.com/AgriciDaniel/claude-seo) (commit `6cf1ea9`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `seo-local` | core | Local SEO analysis covering Google Business Profile optimization, NAP consistency, citation health, review signals, local schema markup, location page quality, multi-location SEO, and industry-specific recommendations. Detects business … | [source](https://github.com/AgriciDaniel/claude-seo/tree/6cf1ea9/skills/seo-local) |
+
+## Source: alirezarezvani/claude-skills
+
+- Repository: [https://github.com/alirezarezvani/claude-skills](https://github.com/alirezarezvani/claude-skills) (commit `0241f43`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `statistical-analyst` | core | Run hypothesis tests, analyze A/B experiment results, calculate sample sizes, and interpret statistical significance with effect sizes. Use when you need to validate whether observed differences are real, size an experiment correctly … | [source](https://github.com/alirezarezvani/claude-skills/tree/0241f43/engineering/statistical-analyst/skills/statistical-analyst) |
+
+## Source: bevibing/tutor-skills
+
+- Repository: [https://github.com/bevibing/tutor-skills](https://github.com/bevibing/tutor-skills) (commit `397110c`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `tutor` | core | Interactive quiz tutor for Obsidian StudyVault learning. Use when the user wants to: (1) Take a diagnostic assessment of their knowledge, (2) Study or review specific sections/topics, (3) Drill weak areas identified in previous sessions, … | [source](https://github.com/bevibing/tutor-skills/tree/397110c/skills/tutor) |
+
+## Source: brycewang-stanford/Auto-Empirical-Research-Skills
+
+- Repository: [https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills) (commit `85bf545`, retrieved 2026-07-14)
+- License: CC-BY-4.0
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `biomedical-skills` | core | 24 biomedical research skills. Trigger: medical research, clinical trials, genomics, bioinformatics. Design: domain databases, wet-lab/dry-lab methods, and ethical compliance guides. | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/domains/biomedical) |
+| `europe-pmc-api` | core | Search biomedical and life sciences literature via Europe PMC | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/literature/search/europe-pmc-api) |
+| `med-researcher-guide` | core | Multi-agent system for biomedical literature review and synthesis | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/domains/biomedical/med-researcher-guide) |
+| `numerical-methods-guide` | core | Apply numerical methods and scientific computing techniques | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/domains/math/numerical-methods-guide) |
+| `academic-baseline` | core | Use when working on any empirical academic research context — paper writing, data analysis, literature review, or any task involving citations, results, or publication artifacts. Establishes non-negotiable principles that govern all other … | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/60-regisely-superpapers/skills/academic-baseline) |
+| `enrichr-api` | core | Perform gene set enrichment analysis using the Enrichr API | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/domains/biomedical/enrichr-api) |
+| `methodology-skills` | core | 13 research methodology skills. Trigger: study design, methodology selection, scientific reasoning, mentoring. Design: rigorous methods frameworks covering qualitative, quantitative, and mixed approaches. | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/research/methodology) |
+| `research-ideation` | core | This skill should be used when the user asks to "brainstorm research ideas", "use 5W1H framework", "identify research gaps", "conduct gap analysis", "start research project", "conduct literature review", "define research question", "select … | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/33-Galaxy-Dawn-claude-scholar/skills/research-ideation) |
+| `results-analysis` | core | This skill should be used when the user asks to "analyze experimental results", "run strict statistical analysis", "compare model performance", "generate scientific figures", "check significance", "do ablation analysis", or mentions … | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/33-Galaxy-Dawn-claude-scholar/skills/results-analysis) |
+| `doctor` | core | System diagnostics and health checks for Diverga plugin. OpenClaw-style Check-Report-Fix pattern with 5-layer diagnostics. Triggers: /diverga:doctor, diverga doctor, system check, diagnose, 진단 | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/25-HosungYou-Diverga/skills/doctor) |
+| `medical-data-api` | core | Access FDA drug data and WHO global health statistics for research | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/43-wentorai-research-plugins/skills/domains/biomedical/medical-data-api) |
+| `literature-review` | core | Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research … | [source](https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/85bf545/skills/03-K-Dense-AI-claude-scientific-skills/literature-review) |
+
+## Source: davila7/claude-code-templates
+
+- Repository: [https://github.com/davila7/claude-code-templates](https://github.com/davila7/claude-code-templates) (commit `fa79251`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `biomni` | core | Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/biomni) |
+| `exploratory-data-analysis` | core | Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/exploratory-data-analysis) |
+| `perplexity-search` | core | Perform AI-powered web searches with real-time information using Perplexity models via LiteLLM and OpenRouter. This skill should be used when conducting web searches for current information, finding recent scientific literature, getting … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/perplexity-search) |
+| `treatment-plans` | core | Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/treatment-plans) |
+| `Excel Analysis` | core | Analyze Excel spreadsheets, create pivot tables, generate charts, and perform data analysis. Use when analyzing Excel files, spreadsheets, tabular data, or .xlsx files. | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/enterprise-communication/excel-analysis) |
+| `hypogenic` | core | Automated hypothesis generation and testing using large language models. Use this skill when generating scientific hypotheses from datasets, combining literature insights with empirical data, testing hypotheses against observational data, … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/hypogenic) |
+| `pydeseq2` | core | Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis. | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/pydeseq2) |
+| `literature-review` | core | Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/literature-review) |
+| `clinical-reports` | adjacent | Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/clinical-reports) |
+| `denario` | adjacent | Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/scientific/denario) |
+| `Ethical Hacking Methodology` | adjacent | This skill should be used when the user asks to "learn ethical hacking", "understand penetration testing lifecycle", "perform reconnaissance", "conduct security scanning", "exploit vulnerabilities", or "write penetration test reports". It … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/security/ethical-hacking-methodology) |
+| `Red Team Tools and Methodology` | adjacent | This skill should be used when the user asks to "follow red team methodology", "perform bug bounty hunting", "automate reconnaissance", "hunt for XSS vulnerabilities", "enumerate subdomains", or needs security researcher techniques and … | [source](https://github.com/davila7/claude-code-templates/tree/fa79251/cli-tool/components/skills/security/red-team-tools) |
+
+## Source: fcakyon/claude-codex-settings
+
+- Repository: [https://github.com/fcakyon/claude-codex-settings](https://github.com/fcakyon/claude-codex-settings) (commit `44b7c00`, retrieved 2026-07-14)
+- License: Apache-2.0
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `paper-search-usage` | core | This skill should be used when user asks to "search for papers", "find research papers", "search arXiv", "search PubMed", "find academic papers", "search IEEE", "search Scopus", or "look up scientific literature". | [source](https://github.com/fcakyon/claude-codex-settings/tree/44b7c00/plugins/paper-search-tools/skills/paper-search-usage) |
+
+## Source: ferdinandobons/startup-skill
+
+- Repository: [https://github.com/ferdinandobons/startup-skill](https://github.com/ferdinandobons/startup-skill) (commit `a5f97c3`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `startup-design` | core | Design, validate, and plan a startup from scratch. Covers market research, competitive analysis, business model, brand identity, product definition, financial projections, and validation experiments. Trigger when the user has a startup … | [source](https://github.com/ferdinandobons/startup-skill/tree/a5f97c3/startup-design) |
+
+## Source: foryourhealth111-pixel/Vibe-Skills
+
+- Repository: [https://github.com/foryourhealth111-pixel/Vibe-Skills](https://github.com/foryourhealth111-pixel/Vibe-Skills) (commit `34429a8`, retrieved 2026-07-14)
+- License: Apache-2.0
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `exploratory-data-analysis` | core | Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/exploratory-data-analysis) |
+| `perplexity-search` | core | Perform AI-powered web searches with real-time information using Perplexity models via LiteLLM and OpenRouter. This skill should be used when conducting web searches for current information, finding recent scientific literature, getting … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/perplexity-search) |
+| `treatment-plans` | core | Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/treatment-plans) |
+| `scientific-reporting` | core | Write research/technical reports with strong structure + figure standards. Supports Markdown/HTML/PDF outputs (Quarto optional), executive summary, methods, results, discussion, and reproducibility appendix. | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/scientific-reporting) |
+| `scientific-brainstorming` | core | Open-ended scientific ideation partner. Use for research gaps, mechanism exploration, interdisciplinary connections, assumptions, possible research directions, and lightweight literature matrix or A+B paper-combination idea mapping. For … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/scientific-brainstorming) |
+| `literature-review` | core | Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/literature-review) |
+| `sentry` | adjacent | Use when the user asks to inspect Sentry issues or events, summarize recent production errors, or pull basic Sentry health data via the Sentry API; perform read-only queries with the bundled script and require `SENTRY_AUTH_TOKEN`. | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/sentry) |
+| `clinical-reports` | adjacent | Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/clinical-reports) |
+| `denario` | adjacent | Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, … | [source](https://github.com/foryourhealth111-pixel/Vibe-Skills/tree/34429a8/bundled/skills/denario) |
+
+## Source: infrasity-labs/dev-gtm-claude-skills
+
+- Repository: [https://github.com/infrasity-labs/dev-gtm-claude-skills](https://github.com/infrasity-labs/dev-gtm-claude-skills) (commit `02cfefb`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `seo-local` | core | Local SEO analysis covering Google Business Profile optimization, NAP consistency, citation health, review signals, local schema markup, location page quality, multi-location SEO, and industry-specific recommendations. Detects business … | [source](https://github.com/infrasity-labs/dev-gtm-claude-skills/tree/02cfefb/.claude/skills/seo-local) |
+
+## Source: jeremylongshore/claude-code-plugins-plus-skills
+
+- Repository: [https://github.com/jeremylongshore/claude-code-plugins-plus-skills](https://github.com/jeremylongshore/claude-code-plugins-plus-skills) (commit `e112938a`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `abridge-reference-architecture` | core | Implement Abridge reference architecture for clinical AI integration. Use when designing a new Abridge deployment, reviewing project structure, or planning multi-site health system rollouts with EHR integration. Trigger: "abridge … | [source](https://github.com/jeremylongshore/claude-code-plugins-plus-skills/tree/e112938a/plugins/saas-packs/abridge-pack/skills/abridge-reference-architecture) |
+| `abridge-sdk-patterns` | core | Apply production-ready patterns for Abridge clinical AI integration. Use when building reusable Abridge client wrappers, implementing HIPAA-compliant error handling, or establishing team coding standards for healthcare AI. Trigger: … | [source](https://github.com/jeremylongshore/claude-code-plugins-plus-skills/tree/e112938a/plugins/saas-packs/abridge-pack/skills/abridge-sdk-patterns) |
+| `abridge-security-basics` | core | Apply HIPAA-compliant security practices for Abridge clinical AI integrations. Use when securing PHI in transit/at rest, configuring access controls, implementing audit logging, or preparing for HIPAA security audits. Trigger: "abridge … | [source](https://github.com/jeremylongshore/claude-code-plugins-plus-skills/tree/e112938a/plugins/saas-packs/abridge-pack/skills/abridge-security-basics) |
+| `hypothesis-tester` | core | Structured hypothesis formulation, experiment design, and results interpretation for Product Managers. Use when the user needs to validate an assumption, design an A/B test, evaluate experiment results, or decide whether to ship based on … | [source](https://github.com/jeremylongshore/claude-code-plugins-plus-skills/tree/e112938a/plugins/productivity/pm-ai-partner/skills/hypothesis-tester) |
+| `abridge-performance-tuning` | adjacent | Optimize Abridge clinical AI integration performance for high-volume deployments. Use when reducing note generation latency, optimizing audio streaming throughput, improving FHIR push performance, or scaling for multi-site health systems. … | [source](https://github.com/jeremylongshore/claude-code-plugins-plus-skills/tree/e112938a/plugins/saas-packs/abridge-pack/skills/abridge-performance-tuning) |
+| `adobe-advanced-troubleshooting` | adjacent | Apply advanced debugging techniques for Adobe API issues: IMS token introspection, Firefly job failure analysis, PDF Services error codes, and network-layer diagnostics for Adobe endpoints. Trigger with phrases like "adobe hard bug", … | [source](https://github.com/jeremylongshore/claude-code-plugins-plus-skills/tree/e112938a/plugins/saas-packs/adobe-pack/skills/adobe-advanced-troubleshooting) |
+
+## Source: K-Dense-AI/claude-scientific-skills
+
+- Repository: [https://github.com/K-Dense-AI/claude-scientific-skills](https://github.com/K-Dense-AI/claude-scientific-skills) (commit `4d97e29`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `exploratory-data-analysis` | core | Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/exploratory-data-analysis) |
+| `treatment-plans` | core | Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/treatment-plans) |
+| `bgpt-paper-search` | core | Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server. Returns 25+ fields per paper including methods, results, sample sizes, quality scores, and conclusions. Use for … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/bgpt-paper-search) |
+| `literature-review` | core | Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/literature-review) |
+| `bids` | adjacent | Use this skill when working with Brain Imaging Data Structure (BIDS) datasets: organizing neuroscience and biomedical data (MRI, EEG, MEG, iEEG, PET, microscopy, NIRS, motion capture, EMG, MR spectroscopy, behavioral), querying BIDS … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/bids) |
+| `clinical-reports` | adjacent | Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full … | [source](https://github.com/K-Dense-AI/claude-scientific-skills/tree/4d97e29/skills/clinical-reports) |
+
+## Source: K-Dense-AI/scientific-agent-skills
+
+- Repository: [https://github.com/K-Dense-AI/scientific-agent-skills](https://github.com/K-Dense-AI/scientific-agent-skills) (commit `4d97e29`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `exploratory-data-analysis` | core | Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/exploratory-data-analysis) |
+| `treatment-plans` | core | Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/treatment-plans) |
+| `bgpt-paper-search` | core | Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server. Returns 25+ fields per paper including methods, results, sample sizes, quality scores, and conclusions. Use for … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/bgpt-paper-search) |
+| `literature-review` | core | Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/literature-review) |
+| `bids` | adjacent | Use this skill when working with Brain Imaging Data Structure (BIDS) datasets: organizing neuroscience and biomedical data (MRI, EEG, MEG, iEEG, PET, microscopy, NIRS, motion capture, EMG, MR spectroscopy, behavioral), querying BIDS … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/bids) |
+| `clinical-reports` | adjacent | Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full … | [source](https://github.com/K-Dense-AI/scientific-agent-skills/tree/4d97e29/skills/clinical-reports) |
+
+## Source: mohitagw15856/pm-claude-skills
+
+- Repository: [https://github.com/mohitagw15856/pm-claude-skills](https://github.com/mohitagw15856/pm-claude-skills) (commit `876fa30`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `board-minutes` | core | Write formal board meeting minutes from an agenda, notes, transcript, or discussion summary. Use when asked to draft board minutes, governance minutes, meeting minutes for a board, or a formal record of decisions and actions. Produces … | [source](https://github.com/mohitagw15856/pm-claude-skills/tree/876fa30/plugins/pm-business/skills/board-minutes) |
+| `sop-meeting-prep` | core | Prepare an S&OP cycle readout that surfaces the demand-supply gaps and forces the three decisions the meeting must make. Use when asked to prep an S&OP meeting, build the executive S&OP deck, summarize demand vs supply for the monthly … | [source](https://github.com/mohitagw15856/pm-claude-skills/tree/876fa30/plugins/pm-supplychain/skills/sop-meeting-prep) |
+
+## Source: mvanhorn/last30days-skill
+
+- Repository: [https://github.com/mvanhorn/last30days-skill](https://github.com/mvanhorn/last30days-skill) (commit `4b02791`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `last30days` | core | Research what people actually say about any topic in the last 30 days. Pulls posts and engagement from Reddit, X, YouTube, TikTok, Hacker News, Polymarket, GitHub, and the web. Includes a doctor health check to diagnose broken or missing … | [source](https://github.com/mvanhorn/last30days-skill/tree/4b02791/skills/last30days) |
+
+## Source: nexu-io/open-design
+
+- Repository: [https://github.com/nexu-io/open-design](https://github.com/nexu-io/open-design) (commit `4b66023`, retrieved 2026-07-14)
+- License: Apache-2.0
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `html-ppt-testing-safety-alert` | core | A hospital data-governance briefing: patient-data risk, the control framework, accountability, and the approval the board must give. Built as a decision-grade policy briefing deck for health-system board, regulators. | [source](https://github.com/nexu-io/open-design/tree/4b66023/design-templates/html-ppt-testing-safety-alert) |
+
+## Source: OpenRaiser/NanoResearch
+
+- Repository: [https://github.com/OpenRaiser/NanoResearch](https://github.com/OpenRaiser/NanoResearch) (commit `7144364`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `academic-plotting` | adjacent | Generates publication-quality figures for ML papers from research context. Given a paper section or description, extracts system components and relationships to generate architecture diagrams via Gemini. Given experiment results or data, … | [source](https://github.com/OpenRaiser/NanoResearch/tree/7144364/skills/vendor-ai-research/academic-plotting) |
+
+## Source: Orchestra-Research/AI-research-SKILLs
+
+- Repository: [https://github.com/Orchestra-Research/AI-research-SKILLs](https://github.com/Orchestra-Research/AI-research-SKILLs) (commit `773a529`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `academic-plotting` | adjacent | Generates publication-quality figures for ML papers from research context. Given a paper section or description, extracts system components and relationships to generate architecture diagrams via Gemini. Given experiment results or data, … | [source](https://github.com/Orchestra-Research/AI-research-SKILLs/tree/773a529/20-ml-paper-writing/academic-plotting) |
+
+## Source: parcadei/Continuous-Claude-v3
+
+- Repository: [https://github.com/parcadei/Continuous-Claude-v3](https://github.com/parcadei/Continuous-Claude-v3) (commit `d07ff4b`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `mot` | core | System health check (MOT) for skills, agents, hooks, and memory | [source](https://github.com/parcadei/Continuous-Claude-v3/tree/d07ff4b/.claude/skills/mot) |
+
+## Source: pedrohcgs/claude-code-my-workflow
+
+- Repository: [https://github.com/pedrohcgs/claude-code-my-workflow](https://github.com/pedrohcgs/claude-code-my-workflow) (commit `be53c12`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `slide-excellence` | core | Multi-agent comprehensive slide review (visual + pedagogy + proofreading, plus TikZ / parity / substance conditionally). Use when user says "full review", "excellence pass", "comprehensive check", "review everything", "pre-release review", … | [source](https://github.com/pedrohcgs/claude-code-my-workflow/tree/be53c12/.claude/skills/slide-excellence) |
+
+## Source: rampstackco/claude-skills
+
+- Repository: [https://github.com/rampstackco/claude-skills](https://github.com/rampstackco/claude-skills) (commit `bc6d961`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `experiment-design` | core | A discipline for designing experiments (A/B tests, multivariate, holdouts) so the results actually answer the question you asked. Hypothesis writing, sample size, duration, segment analysis, interpretation, decision-making, and the common … | [source](https://github.com/rampstackco/claude-skills/tree/bc6d961/skills/experiment-design) |
+
+## Source: RoundTable02/tutor-skills
+
+- Repository: [https://github.com/RoundTable02/tutor-skills](https://github.com/RoundTable02/tutor-skills) (commit `397110c`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `tutor` | core | Interactive quiz tutor for Obsidian StudyVault learning. Use when the user wants to: (1) Take a diagnostic assessment of their knowledge, (2) Study or review specific sections/topics, (3) Drill weak areas identified in previous sessions, … | [source](https://github.com/RoundTable02/tutor-skills/tree/397110c/skills/tutor) |
+
+## Source: silverstein/minutes
+
+- Repository: [https://github.com/silverstein/minutes](https://github.com/silverstein/minutes) (commit `3fb2e83`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `minutes-ideas` | core | Surface recent voice memos and ideas captured from any device. Use when the user asks "what ideas did I have?", "what were my recent memos?", "what did I record while walking?", or wants to recall a captured thought. | [source](https://github.com/silverstein/minutes/tree/3fb2e83/.agents/skills/minutes/minutes-ideas) |
+
+## Source: vibeeval/vibecosystem
+
+- Repository: [https://github.com/vibeeval/vibecosystem](https://github.com/vibeeval/vibecosystem) (commit `cea9462`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `mot` | core | System health check (MOT) for skills, agents, hooks, and memory | [source](https://github.com/vibeeval/vibecosystem/tree/cea9462/skills/mot) |
+
+## Source: wanshuiyin/Auto-claude-code-research-in-sleep
+
+- Repository: [https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep](https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep) (commit `eb5c9d7`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `research-lit` | core | Search and analyze research papers, find related work, summarize key ideas. Use when user says "find papers", "related work", "literature review", "what does this paper say", or needs to understand academic papers. | [source](https://github.com/wanshuiyin/Auto-claude-code-research-in-sleep/tree/eb5c9d7/skills/research-lit) |
+
+## Source: zechenzhangAGI/AI-research-SKILLs
+
+- Repository: [https://github.com/zechenzhangAGI/AI-research-SKILLs](https://github.com/zechenzhangAGI/AI-research-SKILLs) (commit `773a529`, retrieved 2026-07-14)
+- License: MIT
+
+| Skill | Tier | What it adds | Upstream |
+|---|---|---|---|
+| `academic-plotting` | adjacent | Generates publication-quality figures for ML papers from research context. Given a paper section or description, extracts system components and relationships to generate architecture diagrams via Gemini. Given experiment results or data, … | [source](https://github.com/zechenzhangAGI/AI-research-SKILLs/tree/773a529/20-ml-paper-writing/academic-plotting) |
--- a/references/profile.md
+++ b/references/profile.md
@@ -0,0 +1,26 @@
+# Occupation profile — biomedical scientist advanced
+
+- **ESCO URI:** http://data.europa.eu/esco/occupation/b7b17a85-ccd0-4d2f-92f2-7e99839731b0
+- **ESCO code:** 2269.14
+- **ISCO-08 group:** 2269 — Health professionals not elsewhere classified
+- **O*NET-SOC:** 29-2011.00 — Medical and Clinical Laboratory Technologists (match: closeMatch)
+
+## Description (ESCO)
+
+Biomedical scientists advanced undertake advanced translational research in the biomedical laboratory sciences field and perform as educators of their professions or as other professionals, as well as acting as consultants in the field.
+
+## Definition
+
+nan
+
+## Alternative labels
+
+- advanced biomedical doctor
+- advanced biomedical researcher
+- advanced practitioner in biomedical science
+- advanced medical laboratory scientist
+- expert scientist in biomedicine
+- advanced analyst in biomedical science
+- advanced medical scientist
+- advanced clinical laboratory scientist
+- advanced researcher in biomedical science
--- a/references/skills.md
+++ b/references/skills.md
@@ -0,0 +1,69 @@
+# Competences — biomedical scientist advanced
+
+Source: ESCO v1.2.1 occupation-skill relations (http://data.europa.eu/esco/occupation/b7b17a85-ccd0-4d2f-92f2-7e99839731b0).
+
+## Essential
+
+- **accept own accountability** (skill/competence)
+- **adhere to organisational guidelines** (skill/competence)
+- **analytical methods in biomedical sciences** (knowledge)
+- **apply context specific clinical competences** (skill/competence)
+- **apply scientific methods** (skill/competence)
+- **assist in the production of laboratory documentation** (skill/competence)
+- **biomedical science** (knowledge)
+- **biomedical scientists' role in health care system** (knowledge)
+- **biomedical techniques** (knowledge)
+- **biosafety in biomedical laboratory** (knowledge)
+- **conduct health related research** (skill/competence)
+- **dermapathology** (knowledge)
+- **health care occupation-specific ethics** (knowledge)
+- **make clinical decisions** (skill/competence)
+- **neoplasia** (knowledge)
+- **pedagogy** (knowledge)
+- **perform cerebrospinal fluid analysis** (skill/competence)
+- **perform pathology consultations** (skill/competence)
+- **perform reconstructive microsurgery** (skill/competence)
+- **perform transcranial magnetic stimulation** (skill/competence)
+- **record data from biomedical tests** (skill/competence)
+- **scientific literature** (knowledge)
+- **study topics** (skill/competence)
+- **tissue cytogenetics** (knowledge)
+- **validate biomedical analysis results** (skill/competence)
+
+## Optional
+
+- advise on healthcare users' informed consent (skill/competence)
+- advise patients on infectious diseases when travelling (skill/competence)
+- analyse body fluids (skill/competence)
+- analyse cell cultures (skill/competence)
+- biology (knowledge)
+- biophysics (knowledge)
+- cancer risks (knowledge)
+- chemistry (knowledge)
+- clinical cytology (knowledge)
+- clinical immunology (knowledge)
+- clinical immunopathology (knowledge)
+- clinical microbiology (knowledge)
+- cryopreservation (knowledge)
+- embryology (knowledge)
+- epidemiology (knowledge)
+- examine samples in dermatology (skill/competence)
+- explain the molecular basis of a disease to patients (skill/competence)
+- hepatology (knowledge)
+- histopathology (knowledge)
+- human physiology (knowledge)
+- immunohaematology (knowledge)
+- immunology (knowledge)
+- industrial research and development (knowledge)
+- interpret electromyograms (skill/competence)
+- intracranial hypertension (knowledge)
+- listen actively (skill/competence)
+- medical genetics (knowledge)
+- medical informatics (knowledge)
+- microbiology-bacteriology (knowledge)
+- pathology (knowledge)
+- perform virological test (skill/competence)
+- research new treatments for blood related disorders (skill/competence)
+- toxicology (knowledge)
+- use foreign languages for health-related research (skill/competence)
+- work in multidisciplinary health teams (skill/competence)
--- a/references/tasks.md
+++ b/references/tasks.md
@@ -0,0 +1,40 @@
+# Tasks & work activities — biomedical scientist advanced
+
+Source: O*NET 30.3, occupation 29-2011.00 (Medical and Clinical Laboratory Technologists).
+
+## Task statements
+
+- **[Core]** Establish or monitor quality assurance programs or activities to ensure the accuracy of laboratory results.
+- **[Core]** Collect and study blood samples to determine the number of cells, their morphology, or their blood group, blood type, or compatibility for transfusion purposes, using microscopic techniques.
+- **[Core]** Analyze laboratory findings to check the accuracy of the results.
+- **[Core]** Conduct chemical analysis of body fluids, including blood, urine, or spinal fluid, to determine presence of normal or abnormal components.
+- **[Core]** Operate, calibrate, or maintain equipment used in quantitative or qualitative analysis, such as spectrophotometers, calorimeters, flame photometers, or computer-controlled analyzers.
+- **[Core]** Enter data from analysis of medical tests or clinical results into computer for storage.
+- **[Core]** Analyze samples of biological material for chemical content or reaction.
+- **[Core]** Set up, clean, and maintain laboratory equipment.
+- **[Core]** Provide technical information about test results to physicians, family members, or researchers.
+- **[Core]** Supervise, train, or direct lab assistants, medical and clinical laboratory technicians or technologists, or other medical laboratory workers engaged in laboratory testing.
+- **[Core]** Develop, standardize, evaluate, or modify procedures, techniques, or tests used in the analysis of specimens or in medical laboratory experiments.
+- **[Core]** Obtain, cut, stain, and mount biological material on slides for microscopic study and diagnosis, following standard laboratory procedures.
+- **[Core]** Select and prepare specimens and media for cell cultures, using aseptic technique and knowledge of medium components and cell requirements.
+- **[Supplemental]** Cultivate, isolate, or assist in identifying microbial organisms or perform various tests on these microorganisms.
+- **[Supplemental]** Harvest cell cultures at optimum time, based on knowledge of cell cycle differences and culture conditions.
+
+## Detailed work activities
+
+- Analyze laboratory findings.
+- Analyze laboratory specimens to detect abnormalities or other problems.
+- Clean medical equipment or facilities.
+- Collect biological specimens from patients.
+- Communicate detailed medical information to patients or family members.
+- Communicate test or assessment results to medical professionals.
+- Cultivate micro-organisms for study, testing, or medical preparations.
+- Determine protocols for medical procedures.
+- Develop healthcare quality and safety procedures.
+- Enter patient or treatment data into computers.
+- Maintain medical laboratory equipment.
+- Operate laboratory equipment to analyze medical samples.
+- Prepare biological specimens for laboratory analysis.
+- Prepare medical supplies or equipment for use.
+- Supervise technical medical personnel.
+- Train medical providers.
--- a/references/tools.md
+++ b/references/tools.md
@@ -0,0 +1,29 @@
+# Tools & technology — biomedical scientist advanced
+
+Source: O*NET 30.3 'Software Skills' for 29-2011.00.
+
+| Software | Category | Hot technology |
+|---|---|---|
+| eClinicalWorks EHR software | Medical software | yes |
+| MEDITECH software | Medical software | yes |
+| Microsoft Office software | Office suite software | yes |
+| Microsoft PowerPoint | Presentation software | yes |
+| Microsoft Project | Project management software | yes |
+| Microsoft Excel | Spreadsheet software | yes |
+| Microsoft Word | Word processing software | yes |
+| Database software | Data base user interface and query software |  |
+| FileMaker Pro | Data base user interface and query software |  |
+| Email software | Electronic mail software |  |
+| Commercial plate reader software | Medical software |  |
+| Electronic medical record EMR software | Medical software |  |
+| Hematology laboratory workflow management software | Medical software |  |
+| Laboratory information system LIS | Medical software |  |
+| Medical digital imaging software | Medical software |  |
+| Medical procedure coding software | Medical software |  |
+| Medical system integration software | Medical software |  |
+| Microscopic image capturing software | Medical software |  |
+| Quality control software | Medical software |  |
+| Reimbursement screening software | Medical software |  |
+| Specimen tracking software | Medical software |  |
+| Test result delivery software | Medical software |  |
+| Test routing software | Medical software |  |