skills-core/biomedical-scientist-advanced
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biomedical-scientist-advanced/references/ai-skills.md
skillfactor-pipeline 168498536e feat: biomedical-scientist-advanced skill package v0.1.0
2026-08-14 17:07:20 +02:00

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External AI agent skills — biomedical-scientist-advanced

Proven, publicly available AI agent skills mapped to this occupation. Nothing is copied from the sources: every entry is a name, a one-line summary and a link to the upstream skill package. Each section names its source repository, commit, license and retrieval date.

Tiers: core = the skill directly exercises a top market hard skill, tool or method (from gated job-ad evidence) or an essential ESCO competence of this occupation; adjacent = plausibly useful, secondary. Entries are capped at 12 per source and 80 in total per occupation (core first, strongest matches survive); everything beyond the caps is excluded and logged in the pipeline audit trail, not in this package.

Matched deterministically (ISCO group + title/competence keywords, tiered against market evidence + ESCO essentials) by pipeline/p5_enrich_ai_skills.py on 2026-07-14.

Source: anthropics/skills

  • Repository: https://github.com/anthropics/skills (commit f6656c1, retrieved 2026-07-14)
  • License: Apache-2.0; the document skills (docx/pdf/pptx/xlsx) are source-available — see the LICENSE.txt in the upstream skill folder
Skill Tier What it adds Upstream
pdf adjacent Use this skill whenever the user wants to do anything with PDF files. This includes reading or extracting text/tables from PDFs, combining or merging multiple PDFs into one, splitting PDFs apart, rotating pages, adding watermarks, creating … source
docx adjacent Use this skill whenever the user wants to create, read, edit, or manipulate Word documents (.docx files) or Word templates (.dotx files). Triggers include: any mention of 'Word doc', 'word document', '.docx', '.dotx', or requests to … source

Source: a5c-ai/babysitter

Skill Tier What it adds Upstream
population-health-stratification core Stratify patient populations by risk level using claims data, clinical data, and social determinants to prioritize care management interventions source
bioethics-deliberation core Apply bioethical principles (autonomy, beneficence, non-maleficence, justice) and case-based reasoning to healthcare decisions, research protocols, and clinical dilemmas source
fea-mesh-generator adjacent Finite element mesh generation skill optimized for biomedical geometries including implants, anatomical structures, and tissue models source
pubmed-literature-miner adjacent Biomedical literature mining using PubMed/MEDLINE for systematic review support source

Source: affaan-m/everything-claude-code

Skill Tier What it adds Upstream
literature-review core Systematic literature-review workflow for academic, biomedical, technical, and scientific topics, including search planning, source screening, synthesis, citation checks, and evidence logging. source
pubmed-database adjacent Direct PubMed and NCBI E-utilities search workflows for biomedical literature, MeSH queries, PMID lookup, citation retrieval, and API-backed literature monitoring. source

Source: AgriciDaniel/claude-blog

Skill Tier What it adds Upstream
blog-audit adjacent Full-site blog health assessment scanning all blog files for quality scores, orphan pages, topic cannibalization, stale content, and AI citation readiness. Spawns parallel subagents for comprehensive analysis. Produces per-post scores and … source

Source: AgriciDaniel/claude-seo

Skill Tier What it adds Upstream
seo-local core Local SEO analysis covering Google Business Profile optimization, NAP consistency, citation health, review signals, local schema markup, location page quality, multi-location SEO, and industry-specific recommendations. Detects business … source

Source: alirezarezvani/claude-skills

Skill Tier What it adds Upstream
statistical-analyst core Run hypothesis tests, analyze A/B experiment results, calculate sample sizes, and interpret statistical significance with effect sizes. Use when you need to validate whether observed differences are real, size an experiment correctly … source

Source: bevibing/tutor-skills

Skill Tier What it adds Upstream
tutor core Interactive quiz tutor for Obsidian StudyVault learning. Use when the user wants to: (1) Take a diagnostic assessment of their knowledge, (2) Study or review specific sections/topics, (3) Drill weak areas identified in previous sessions, … source

Source: brycewang-stanford/Auto-Empirical-Research-Skills

Skill Tier What it adds Upstream
biomedical-skills core 24 biomedical research skills. Trigger: medical research, clinical trials, genomics, bioinformatics. Design: domain databases, wet-lab/dry-lab methods, and ethical compliance guides. source
europe-pmc-api core Search biomedical and life sciences literature via Europe PMC source
med-researcher-guide core Multi-agent system for biomedical literature review and synthesis source
numerical-methods-guide core Apply numerical methods and scientific computing techniques source
academic-baseline core Use when working on any empirical academic research context — paper writing, data analysis, literature review, or any task involving citations, results, or publication artifacts. Establishes non-negotiable principles that govern all other … source
enrichr-api core Perform gene set enrichment analysis using the Enrichr API source
methodology-skills core 13 research methodology skills. Trigger: study design, methodology selection, scientific reasoning, mentoring. Design: rigorous methods frameworks covering qualitative, quantitative, and mixed approaches. source
research-ideation core This skill should be used when the user asks to "brainstorm research ideas", "use 5W1H framework", "identify research gaps", "conduct gap analysis", "start research project", "conduct literature review", "define research question", "select … source
results-analysis core This skill should be used when the user asks to "analyze experimental results", "run strict statistical analysis", "compare model performance", "generate scientific figures", "check significance", "do ablation analysis", or mentions … source
doctor core System diagnostics and health checks for Diverga plugin. OpenClaw-style Check-Report-Fix pattern with 5-layer diagnostics. Triggers: /diverga:doctor, diverga doctor, system check, diagnose, 진단 source
medical-data-api core Access FDA drug data and WHO global health statistics for research source
literature-review core Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research … source

Source: davila7/claude-code-templates

Skill Tier What it adds Upstream
biomni core Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical research including CRISPR … source
exploratory-data-analysis core Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. … source
perplexity-search core Perform AI-powered web searches with real-time information using Perplexity models via LiteLLM and OpenRouter. This skill should be used when conducting web searches for current information, finding recent scientific literature, getting … source
treatment-plans core Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, … source
Excel Analysis core Analyze Excel spreadsheets, create pivot tables, generate charts, and perform data analysis. Use when analyzing Excel files, spreadsheets, tabular data, or .xlsx files. source
hypogenic core Automated hypothesis generation and testing using large language models. Use this skill when generating scientific hypotheses from datasets, combining literature insights with empirical data, testing hypotheses against observational data, … source
pydeseq2 core Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis. source
literature-review core Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research … source
clinical-reports adjacent Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full … source
denario adjacent Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, … source
Ethical Hacking Methodology adjacent This skill should be used when the user asks to "learn ethical hacking", "understand penetration testing lifecycle", "perform reconnaissance", "conduct security scanning", "exploit vulnerabilities", or "write penetration test reports". It … source
Red Team Tools and Methodology adjacent This skill should be used when the user asks to "follow red team methodology", "perform bug bounty hunting", "automate reconnaissance", "hunt for XSS vulnerabilities", "enumerate subdomains", or needs security researcher techniques and … source

Source: fcakyon/claude-codex-settings

Skill Tier What it adds Upstream
paper-search-usage core This skill should be used when user asks to "search for papers", "find research papers", "search arXiv", "search PubMed", "find academic papers", "search IEEE", "search Scopus", or "look up scientific literature". source

Source: ferdinandobons/startup-skill

Skill Tier What it adds Upstream
startup-design core Design, validate, and plan a startup from scratch. Covers market research, competitive analysis, business model, brand identity, product definition, financial projections, and validation experiments. Trigger when the user has a startup … source

Source: foryourhealth111-pixel/Vibe-Skills

Skill Tier What it adds Upstream
exploratory-data-analysis core Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. … source
perplexity-search core Perform AI-powered web searches with real-time information using Perplexity models via LiteLLM and OpenRouter. This skill should be used when conducting web searches for current information, finding recent scientific literature, getting … source
treatment-plans core Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, … source
scientific-reporting core Write research/technical reports with strong structure + figure standards. Supports Markdown/HTML/PDF outputs (Quarto optional), executive summary, methods, results, discussion, and reproducibility appendix. source
scientific-brainstorming core Open-ended scientific ideation partner. Use for research gaps, mechanism exploration, interdisciplinary connections, assumptions, possible research directions, and lightweight literature matrix or A+B paper-combination idea mapping. For … source
literature-review core Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research … source
sentry adjacent Use when the user asks to inspect Sentry issues or events, summarize recent production errors, or pull basic Sentry health data via the Sentry API; perform read-only queries with the bundled script and require SENTRY_AUTH_TOKEN. source
clinical-reports adjacent Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full … source
denario adjacent Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, … source

Source: infrasity-labs/dev-gtm-claude-skills

Skill Tier What it adds Upstream
seo-local core Local SEO analysis covering Google Business Profile optimization, NAP consistency, citation health, review signals, local schema markup, location page quality, multi-location SEO, and industry-specific recommendations. Detects business … source

Source: jeremylongshore/claude-code-plugins-plus-skills

Skill Tier What it adds Upstream
abridge-reference-architecture core Implement Abridge reference architecture for clinical AI integration. Use when designing a new Abridge deployment, reviewing project structure, or planning multi-site health system rollouts with EHR integration. Trigger: "abridge … source
abridge-sdk-patterns core Apply production-ready patterns for Abridge clinical AI integration. Use when building reusable Abridge client wrappers, implementing HIPAA-compliant error handling, or establishing team coding standards for healthcare AI. Trigger: … source
abridge-security-basics core Apply HIPAA-compliant security practices for Abridge clinical AI integrations. Use when securing PHI in transit/at rest, configuring access controls, implementing audit logging, or preparing for HIPAA security audits. Trigger: "abridge … source
hypothesis-tester core Structured hypothesis formulation, experiment design, and results interpretation for Product Managers. Use when the user needs to validate an assumption, design an A/B test, evaluate experiment results, or decide whether to ship based on … source
abridge-performance-tuning adjacent Optimize Abridge clinical AI integration performance for high-volume deployments. Use when reducing note generation latency, optimizing audio streaming throughput, improving FHIR push performance, or scaling for multi-site health systems. … source
adobe-advanced-troubleshooting adjacent Apply advanced debugging techniques for Adobe API issues: IMS token introspection, Firefly job failure analysis, PDF Services error codes, and network-layer diagnostics for Adobe endpoints. Trigger with phrases like "adobe hard bug", … source

Source: K-Dense-AI/claude-scientific-skills

Skill Tier What it adds Upstream
exploratory-data-analysis core Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. … source
treatment-plans core Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, … source
bgpt-paper-search core Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server. Returns 25+ fields per paper including methods, results, sample sizes, quality scores, and conclusions. Use for … source
literature-review core Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research … source
bids adjacent Use this skill when working with Brain Imaging Data Structure (BIDS) datasets: organizing neuroscience and biomedical data (MRI, EEG, MEG, iEEG, PET, microscopy, NIRS, motion capture, EMG, MR spectroscopy, behavioral), querying BIDS … source
clinical-reports adjacent Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full … source

Source: K-Dense-AI/scientific-agent-skills

Skill Tier What it adds Upstream
exploratory-data-analysis core Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. … source
treatment-plans core Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, … source
bgpt-paper-search core Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server. Returns 25+ fields per paper including methods, results, sample sizes, quality scores, and conclusions. Use for … source
literature-review core Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research … source
bids adjacent Use this skill when working with Brain Imaging Data Structure (BIDS) datasets: organizing neuroscience and biomedical data (MRI, EEG, MEG, iEEG, PET, microscopy, NIRS, motion capture, EMG, MR spectroscopy, behavioral), querying BIDS … source
clinical-reports adjacent Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full … source

Source: mohitagw15856/pm-claude-skills

Skill Tier What it adds Upstream
board-minutes core Write formal board meeting minutes from an agenda, notes, transcript, or discussion summary. Use when asked to draft board minutes, governance minutes, meeting minutes for a board, or a formal record of decisions and actions. Produces … source
sop-meeting-prep core Prepare an S&OP cycle readout that surfaces the demand-supply gaps and forces the three decisions the meeting must make. Use when asked to prep an S&OP meeting, build the executive S&OP deck, summarize demand vs supply for the monthly … source

Source: mvanhorn/last30days-skill

Skill Tier What it adds Upstream
last30days core Research what people actually say about any topic in the last 30 days. Pulls posts and engagement from Reddit, X, YouTube, TikTok, Hacker News, Polymarket, GitHub, and the web. Includes a doctor health check to diagnose broken or missing … source

Source: nexu-io/open-design

Skill Tier What it adds Upstream
html-ppt-testing-safety-alert core A hospital data-governance briefing: patient-data risk, the control framework, accountability, and the approval the board must give. Built as a decision-grade policy briefing deck for health-system board, regulators. source

Source: OpenRaiser/NanoResearch

Skill Tier What it adds Upstream
academic-plotting adjacent Generates publication-quality figures for ML papers from research context. Given a paper section or description, extracts system components and relationships to generate architecture diagrams via Gemini. Given experiment results or data, … source

Source: Orchestra-Research/AI-research-SKILLs

Skill Tier What it adds Upstream
academic-plotting adjacent Generates publication-quality figures for ML papers from research context. Given a paper section or description, extracts system components and relationships to generate architecture diagrams via Gemini. Given experiment results or data, … source

Source: parcadei/Continuous-Claude-v3

Skill Tier What it adds Upstream
mot core System health check (MOT) for skills, agents, hooks, and memory source

Source: pedrohcgs/claude-code-my-workflow

Skill Tier What it adds Upstream
slide-excellence core Multi-agent comprehensive slide review (visual + pedagogy + proofreading, plus TikZ / parity / substance conditionally). Use when user says "full review", "excellence pass", "comprehensive check", "review everything", "pre-release review", … source

Source: rampstackco/claude-skills

Skill Tier What it adds Upstream
experiment-design core A discipline for designing experiments (A/B tests, multivariate, holdouts) so the results actually answer the question you asked. Hypothesis writing, sample size, duration, segment analysis, interpretation, decision-making, and the common … source

Source: RoundTable02/tutor-skills

Skill Tier What it adds Upstream
tutor core Interactive quiz tutor for Obsidian StudyVault learning. Use when the user wants to: (1) Take a diagnostic assessment of their knowledge, (2) Study or review specific sections/topics, (3) Drill weak areas identified in previous sessions, … source

Source: silverstein/minutes

Skill Tier What it adds Upstream
minutes-ideas core Surface recent voice memos and ideas captured from any device. Use when the user asks "what ideas did I have?", "what were my recent memos?", "what did I record while walking?", or wants to recall a captured thought. source

Source: vibeeval/vibecosystem

Skill Tier What it adds Upstream
mot core System health check (MOT) for skills, agents, hooks, and memory source

Source: wanshuiyin/Auto-claude-code-research-in-sleep

Skill Tier What it adds Upstream
research-lit core Search and analyze research papers, find related work, summarize key ideas. Use when user says "find papers", "related work", "literature review", "what does this paper say", or needs to understand academic papers. source

Source: zechenzhangAGI/AI-research-SKILLs

Skill Tier What it adds Upstream
academic-plotting adjacent Generates publication-quality figures for ML papers from research context. Given a paper section or description, extracts system components and relationships to generate architecture diagrams via Gemini. Given experiment results or data, … source